Mercurial > repos > marcel > caddsuite_mac10_6
view CADDSuite-1.1/galaxyconfigs/countResidues.sh @ 6:decca54699e3
Uploaded Version 1.1
author | marcel |
---|---|
date | Thu, 12 Jan 2012 11:07:03 -0500 |
parents | |
children |
line wrap: on
line source
#!/bin/bash IFS=$'\n'; residue_list="" hetsys_list="" hoh_list="" for line in $(cat $1); do if [ "${line:0:4}" = "ATOM" ];then residue_list+="${line:23:6}\n" else if [ "${line:0:6}" = "HETATM" ];then s2=`echo $line | grep HOH` if [ "$s2" != "" ];then hoh_list+="${line:21:8}\n" else s3=`echo $line | grep WAT` if [ "$s3" != "" ];then hoh_list+="${line:21:8}\n" else hetsys_list+="${line:21:8}\n" fi fi fi fi done IFS=$' '; let num_res=`echo -e "\n"$residue_list | uniq | wc -l` let num_hoh=`echo -e "\n"$hoh_list | uniq | wc -l` let num_hetsys=`echo -e "\n"$hetsys_list | uniq | wc -l` # empty line at begin and end of lists -> substract 2 let num_res-=2 let num_hoh-=2 let num_hetsys-=2 if [ $num_res -lt 0 ]; then let num_res=0 fi if [ $num_hoh -lt 0 ]; then let num_hoh=0 fi if [ $num_hetsys -lt 0 ]; then let num_hetsys=0 fi echo -n "$num_res " if [ $num_res -eq 1 ]; then echo "residue" else echo "residues" fi echo -n "$num_hoh water " if [ $num_hoh -eq 1 ]; then echo "molecule" else echo "molecules" fi echo -n "$num_hetsys " if [ $num_hetsys -eq 1 ]; then echo "heterosystem" else echo "heterosystems" fi