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1 2D-NMR annotation for Galaxy
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2 ============================
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3
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4 [](http://bioconda.github.io) [](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d)
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5
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6 Our project
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7 -----------
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8 The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
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9
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10
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11 2D-NMR annotation
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12 -----------------
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13
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14 Annotation of 2D NMR spectra
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15
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16 Galaxy
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17 ------
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18 Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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19
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20 Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
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21
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22
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23 Dependencies using Conda
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24 ------------------------
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25 [](http://bioconda.github.io)
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26
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27 The main recipe: [https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw](https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw)
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28
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29 ```
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30 #To install miniconda2
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31 #http://conda.pydata.org/miniconda.html
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32 #To install the needed R library using conda:
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33 conda install r-batch r-ptw
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34 #To set an environment:
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35 conda create -n nmr_annotation2d r-batch openxlsx dplyr tidyr ggplot2 colormap stringr`
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36
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37 #To activate the environment:
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38 . activate nmr_annotation2d
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39 ```
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40
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41 [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
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42
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43 Travis
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44 ------
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45 [](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d)
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46
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47 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
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48
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49 Historic contributors
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50 ---------------------
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51 - Marie Tremblay-Franco @mtremblayfr - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [MetaToul](http://www.metatoul.fr/)
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52 - Coline Gardou
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53
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