Mercurial > repos > marie-tremblay-metatoul > 2dnmrannotation

comparison nmr_annotation2d/README.txt @ 0:8035235e46c7 draft

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author marie-tremblay-metatoul
date Mon, 23 Dec 2019 09:26:20 -0500
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1 2D-NMR annotation for Galaxy
2 ============================
3
4 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d)
5
6 Our project
7 -----------
8 The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
9
10
11 2D-NMR annotation
12 -----------------
13
14 Annotation of 2D NMR spectra
15
16 Galaxy
17 ------
18 Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
19
20 Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
21
22
23 Dependencies using Conda
24 ------------------------
25 [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io)
26
27 The main recipe: [https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw](https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw)
28
29 ```
30 #To install miniconda2
31 #http://conda.pydata.org/miniconda.html
32 #To install the needed R library using conda:
33 conda install r-batch r-ptw
34 #To set an environment:
35 conda create -n nmr_annotation2d r-batch openxlsx dplyr tidyr ggplot2 colormap stringr`
36
37 #To activate the environment:
38 . activate nmr_annotation2d
39 ```
40
41 [Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages.
42
43 Travis
44 ------
45 [![Build Status](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d)
46
47 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
48
49 Historic contributors
50 ---------------------
51 - Marie Tremblay-Franco @mtremblayfr - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [MetaToul](http://www.metatoul.fr/)
52 - Coline Gardou
53