Mercurial > repos > marie-tremblay-metatoul > 2dnmrannotation
diff nmr_annotation2d/README.txt @ 0:8035235e46c7 draft
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author | marie-tremblay-metatoul |
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date | Mon, 23 Dec 2019 09:26:20 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/nmr_annotation2d/README.txt Mon Dec 23 09:26:20 2019 -0500 @@ -0,0 +1,53 @@ +2D-NMR annotation for Galaxy +============================ + +[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) [![Build Status](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d) + +Our project +----------- +The [Workflow4Metabolomics](http://workflow4metabolomics.org), W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform. + + +2D-NMR annotation +----------------- + +Annotation of 2D NMR spectra + +Galaxy +------ +Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. + +Homepage: [https://galaxyproject.org/](https://galaxyproject.org/) + + +Dependencies using Conda +------------------------ +[![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io) + +The main recipe: [https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw](https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-ptw) + +``` +#To install miniconda2 +#http://conda.pydata.org/miniconda.html +#To install the needed R library using conda: +conda install r-batch r-ptw +#To set an environment: +conda create -n nmr_annotation2d r-batch openxlsx dplyr tidyr ggplot2 colormap stringr` + +#To activate the environment: +. activate nmr_annotation2d +``` + +[Conda](http://conda.pydata.org/) is package manager that among many other things can be used to manage Python packages. + +Travis +------ +[![Build Status](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/nmr_annotation2d) + +Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes! + +Historic contributors +--------------------- + - Marie Tremblay-Franco @mtremblayfr - [French Metabolomics and Fluxomics Infrastructure (MetaboHUB)](http://www.metabohub.fr/en) - [MetaToul](http://www.metatoul.fr/) + - Coline Gardou +