diff nmr_annotation2d/test-data/2DNMR_Annotation_log.txt @ 0:8035235e46c7 draft

Uploaded
author marie-tremblay-metatoul
date Mon, 23 Dec 2019 09:26:20 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/nmr_annotation2d/test-data/2DNMR_Annotation_log.txt	Mon Dec 23 09:26:20 2019 -0500
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+	PACKAGE INFO
+R version 3.4.3 (2017-11-30)
+Platform: x86_64-pc-linux-gnu (64-bit)
+Running under: Ubuntu 14.04.5 LTS
+
+Matrix products: default
+BLAS: /usr/lib/libblas/libblas.so.3.0
+LAPACK: /usr/lib/lapack/liblapack.so.3.0
+
+locale:
+ [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
+ [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
+ [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
+ [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
+ [9] LC_ADDRESS=C               LC_TELEPHONE=C            
+[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
+
+attached base packages:
+[1] stats     graphics  grDevices utils     datasets  base     
+
+other attached packages:
+[1] tidyr_0.7.2    stringr_1.2.0  openxlsx_4.1.3 ggplot2_2.2.1  dplyr_0.7.4   
+[6] batch_1.1-4   
+
+loaded via a namespace (and not attached):
+ [1] Rcpp_0.12.14     bindr_0.1        magrittr_1.5     munsell_0.4.3   
+ [5] colorspace_1.3-2 R6_2.2.2         rlang_0.4.2      plyr_1.8.4      
+ [9] tools_3.4.3      grid_3.4.3       gtable_0.2.0     cli_1.1.0       
+[13] lazyeval_0.2.1   assertthat_0.2.0 tibble_1.3.4     crayon_1.3.4    
+[17] bindrcpp_0.2     zip_1.0.0        purrr_0.3.3      glue_1.2.0      
+[21] stringi_1.1.6    compiler_3.4.3   methods_3.4.3    scales_0.5.0    
+[25] pkgconfig_2.0.1 
+$xlsfile
+[1] "/home/vagrant/galaxy/database/datasets/001/dataset_1825.dat"
+
+$cosy_2dsequences
+[1] "no"
+
+$jres_2dsequences
+[1] "yes"
+
+$hmbc_2dsequences
+[1] "no"
+
+$hsqc_2dsequences
+[1] "yes"
+
+$tocsy_2dsequences
+[1] "no"
+
+$inHouse_DB_choices.choice
+[1] "no"
+
+$tolppm1
+[1] 0.01
+
+$tolppm2
+[1] 0.5
+
+$tolppmJRES
+[1] 0.002
+
+$threshold
+[1] 0.3
+
+$unicity
+[1] "no"
+
+$logOut
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2767.dat"
+
+$annotationCOSY
+[1] "None"
+
+$ppmCommunCOSY
+[1] "None"
+
+$annotationJRES
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2768.dat"
+
+$ppmCommunJRES
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2769.dat"
+
+$annotationHMBC
+[1] "None"
+
+$ppmCommunHMBC
+[1] "None"
+
+$annotationHSQC
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2770.dat"
+
+$ppmCommunHSQC
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2771.dat"
+
+$annotationTOCSY
+[1] "None"
+
+$ppmCommunTOCSY
+[1] "None"
+
+$annotationCombination
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2772.dat"
+
+$AnnotationGraph
+[1] "/home/vagrant/galaxy/database/datasets/002/dataset_2773.dat"
+
+null device 
+          1 
+Time difference of 1.566586 mins
+
+End of '2D NMR annotation' Galaxy module call: 2019-12-23 10:55:29
\ No newline at end of file