Mercurial > repos > marie-tremblay-metatoul > 2dnmrannotation
view test-data/2DNMR_Annotation_log.txt @ 2:dff7bde22102 draft
"planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics commit b3abcb650e9b38458aa0ac5f7d838811d982ff65"
author | workflow4metabolomics |
---|---|
date | Tue, 04 Feb 2020 10:59:26 -0500 |
parents | |
children |
line wrap: on
line source
PACKAGE INFO R version 3.4.3 (2017-11-30) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.5 LTS Matrix products: default BLAS: /usr/lib/libblas/libblas.so.3.0 LAPACK: /usr/lib/lapack/liblapack.so.3.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets base other attached packages: [1] tidyr_0.7.2 stringr_1.2.0 openxlsx_4.1.3 ggplot2_2.2.1 dplyr_0.7.4 [6] batch_1.1-4 loaded via a namespace (and not attached): [1] Rcpp_0.12.14 bindr_0.1 magrittr_1.5 munsell_0.4.3 [5] colorspace_1.3-2 R6_2.2.2 rlang_0.4.2 plyr_1.8.4 [9] tools_3.4.3 grid_3.4.3 gtable_0.2.0 cli_1.1.0 [13] lazyeval_0.2.1 assertthat_0.2.0 tibble_1.3.4 crayon_1.3.4 [17] bindrcpp_0.2 zip_1.0.0 purrr_0.3.3 glue_1.2.0 [21] stringi_1.1.6 compiler_3.4.3 methods_3.4.3 scales_0.5.0 [25] pkgconfig_2.0.1 $xlsfile [1] "/home/vagrant/galaxy/database/datasets/001/dataset_1825.dat" $cosy_2dsequences [1] "no" $jres_2dsequences [1] "yes" $hmbc_2dsequences [1] "no" $hsqc_2dsequences [1] "yes" $tocsy_2dsequences [1] "no" $inHouse_DB_choices.choice [1] "no" $tolppm1 [1] 0.01 $tolppm2 [1] 0.5 $tolppmJRES [1] 0.002 $threshold [1] 0.3 $unicity [1] "no" $logOut [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2767.dat" $annotationCOSY [1] "None" $ppmCommunCOSY [1] "None" $annotationJRES [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2768.dat" $ppmCommunJRES [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2769.dat" $annotationHMBC [1] "None" $ppmCommunHMBC [1] "None" $annotationHSQC [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2770.dat" $ppmCommunHSQC [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2771.dat" $annotationTOCSY [1] "None" $ppmCommunTOCSY [1] "None" $annotationCombination [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2772.dat" $AnnotationGraph [1] "/home/vagrant/galaxy/database/datasets/002/dataset_2773.dat" null device 1 Time difference of 1.566586 mins End of '2D NMR annotation' Galaxy module call: 2019-12-23 10:55:29