Mercurial > repos > matces > carpet_toolsuite
view carpet-src-1/tools/CARPET/common_unique_probe.xml @ 1:78770028dcf1 default tip
Migrated tool version 1.0.1 from old tool shed archive to new tool shed repository
author | matces |
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date | Tue, 07 Jun 2011 16:59:33 -0400 |
parents | cdd489d98766 |
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<tool id="common unique" name="Com&Uni" version="1.1.0"> <description>easy way to compare results</description> <command>/data/galaxy/tools/CARPET/comuni $window ${match_choice.type} ${match_choice.conc} $input1 $input2 $output</command> <inputs> <param format="tabular" name="input1" type="data" label="Principal table"/> <param format="tabular" name="input2" type="data" label="Secondary table"/> <param name="window" type="integer" size="7" value="0" label="flank"/> <conditional name="match_choice"> <param name="type" type="select" label="Analysis type"> <option value="common">common</option> <option value="unique">unique</option> <option value="union">union</option> </param> <when value="common"> <param name="conc" type="select" label="coordinate common"> <option value="yes">merge</option> <option value="no">Principal table</option> </param> </when> <when value="unique"> <param name="conc" type="select" label="coordinate common"> <option value="no">Principal table</option> </param> </when> <when value="union"> <param name="conc" type="select" label="coordinate common"> <option value="yes">merge</option> </param> </when> </conditional> </inputs> <outputs> <data format="bed" name="output" file="common.dat"/> </outputs> <tests> <test> <param name="input" value="1.gff"/> <output name="output" file="wig-gff2bed.dat"/> </test> </tests> <help> .. class:: infomark **What it does** This tool evaluates the co-occurence of peaks between two GFF files. Common and/or unique peaks can be sorted out as exemplified below. It is possible to add a flanking region to the coordinates of the original peaks. -------- **Example:** - **Common merge** .. image:: static/images/CARPET/common_merg.png -------- - **Common Principal table** .. image:: static/images/CARPET/common_princ.png -------- - **Unique** .. image:: static/images/CARPET/unique.png -------- - **Union** .. image:: static/images/CARPET/union.png </help> </tool>