Mercurial > repos > matt-shirley > fastq_dump
diff fastq_dump.xml @ 3:f6bc4bdbd528 draft
Edited description and requirements.
author | Matthew Shirley <mdshw5@gmail.com> |
---|---|
date | Tue, 13 Nov 2012 16:29:47 -0500 |
parents | 5b83155a24f4 |
children | 6baa258e80f0 |
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--- a/fastq_dump.xml Tue Nov 13 12:02:29 2012 -0500 +++ b/fastq_dump.xml Tue Nov 13 16:29:47 2012 -0500 @@ -1,5 +1,5 @@ -<tool id="fastq_dump" name="Extract fastq from SRA" version="1.0.0"> - <description>Extract fastq format reads from SRA data archive.</description> +<tool id="fastq_dump" name="Extract fastq" version="1.0.0"> + <description> format reads from NCBI SRA.</description> <command>fastq-dump --accession ${input.name} --stdout $split $aligned $input > $output </command> <version_string>fastq-dump --version</version_string> <inputs> @@ -19,6 +19,9 @@ <outputs> <data format="fastqsanger" name="output"/> </outputs> + <requirements> + <requirement type="binary">fastq-dump</requirement> + </requirements> <help> This tool extracts fastqsanger reads from SRA archives using fastq-dump. The fastq-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. </help>