Mercurial > repos > matt-shirley > ncbi_sra_toolkit

comparison tool_dependencies.xml @ 26:7d80b2b24270

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Set config values for caching.
author Matt Shirley <mdshw5@gmail.com>
date Mon, 30 Mar 2015 22:11:38 -0400
parents 393a04ec0fa9
children
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25:393a04ec0fa9 26:7d80b2b24270
22 cd $INSTALL_DIR/src/sra-tools 22 cd $INSTALL_DIR/src/sra-tools
23 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR 23 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR
24 make 24 make
25 make install 25 make install
26 cd $INSTALL_DIR/bin 26 cd $INSTALL_DIR/bin
27 ./vdb-config -s "cache-enabled = false" 27 ./vdb-config -s "/repository/user/main/public/cache-enabled=false"
28 ./vdb-config -s "/repository/user/main/public/root=$INSTALL_DIR"
28 </action> 29 </action>
29 <action type="set_environment"> 30 <action type="set_environment">
30 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 31 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
31 </action> 32 </action>
32 </actions> 33 </actions>