Mercurial > repos > matt-shirley > ncbi_sra_toolkit
diff sra_pileup.xml @ 25:393a04ec0fa9
Update tool requirement versions.
author | Matt Shirley <mdshw5@gmail.com> |
---|---|
date | Mon, 30 Mar 2015 21:57:40 -0400 |
parents | 293927a46697 |
children | fdc981664a43 |
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--- a/sra_pileup.xml Mon Mar 30 21:33:57 2015 -0400 +++ b/sra_pileup.xml Mon Mar 30 21:57:40 2015 -0400 @@ -1,6 +1,6 @@ <tool id="sra_pileup" name="Generate pileup format" version="1.1.1"> <description> from NCBI sra.</description> - <command>sra-pileup --log-level fatal + <command>sra-pileup --log-level fatal #if str( $region ) != "": --aligned-region $region #end if @@ -10,7 +10,7 @@ #if $input.input_select == "file": $input.file #elif $input.input_select == "accession_number": - $input.accession + $input.accession #elif $input.input_select == "text": `cat $input.text` #end if @@ -40,11 +40,11 @@ <data format="pileup" name="output"/> </outputs> <requirements> - <requirement type="package" version="2.3.3-3">sra_toolkit</requirement> + <requirement type="package" version="2.4.5">sra_toolkit</requirement> </requirements> <help> - This tool produces pileup format from sra archives using sra-pileup. - Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. + This tool produces pileup format from sra archives using sra-pileup. + Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. </help>