Mercurial > repos > matt-shirley > ncbi_sra_toolkit

diff fastq_dump.xml @ 27:8be4f23d1018

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Add bam-dump and test data.
author Matt Shirley <mdshw5@gmail.com>
date Mon, 30 Mar 2015 22:40:59 -0400
parents 393a04ec0fa9
children fdc981664a43
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--- a/fastq_dump.xml	Mon Mar 30 22:11:38 2015 -0400
+++ b/fastq_dump.xml	Mon Mar 30 22:40:59 2015 -0400
@@ -114,6 +114,14 @@
   <requirements>
     <requirement type="package" version="2.4.5">sra_toolkit</requirement>
   </requirements>
+  <tests>
+    <test>
+      <param name="input_select" value="accession_number"/>
+      <param name="accession" value="SRR000001"/>
+      <param name="maxID" value="5"/>
+      <output name="output" file="fastq_dump_result.fastq" ftype="fastq" />
+    </test>
+  </tests>
   <help>
     This tool extracts reads from SRA archives using fastq-dump.
     Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies.