Mercurial > repos > matt-shirley > ncbi_sra_toolkit

diff fastq_dump.xml @ 9:eb55ff614fed

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Fixed bug affecting --split-spot option.
author Matt Shirley <mdshw5@gmail.com>
date Fri, 25 Jul 2014 14:27:16 -0400
parents 558a88cd49e4
children 393a04ec0fa9
line wrap: on
line diff
--- a/fastq_dump.xml	Thu Mar 13 16:11:04 2014 -0400
+++ b/fastq_dump.xml	Fri Jul 25 14:27:16 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="fastq_dump" name="Extract reads" version="1.1.1">
+<tool id="fastq_dump" name="Extract reads" version="1.1.2">
   <description> from NCBI SRA.</description>
   <command>
     fastq-dump --log-level fatal
@@ -9,7 +9,7 @@
     #end if
     --defline-seq '@\$sn[_\$rn]/\$ri'
     --stdout
-    #if $split == "yes":
+    #if str( $split ) == "yes":
       --split-spot
     #end if
     #if str( $alignments ) == "aligned":