Mercurial > repos > matt-shirley > ncbi_sra_toolkit
diff fastq_dump.xml @ 28:fdc981664a43
Update to most recent GitHub version passing tests.
| author | Matt Shirley <mdshw5@gmail.com> |
|---|---|
| date | Wed, 01 Apr 2015 12:35:38 -0400 |
| parents | 8be4f23d1018 |
| children |
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--- a/fastq_dump.xml Mon Mar 30 22:40:59 2015 -0400 +++ b/fastq_dump.xml Wed Apr 01 12:35:38 2015 -0400 @@ -1,5 +1,5 @@ <tool id="fastq_dump" name="Extract reads" version="1.1.2"> - <description> from NCBI SRA.</description> + <description> in FASTQ/A format from NCBI SRA.</description> <command> fastq-dump --log-level fatal #if $input.input_select == "file": @@ -123,9 +123,9 @@ </test> </tests> <help> - This tool extracts reads from SRA archives using fastq-dump. - Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. - The fastq-dump program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software. - Contact Matt Shirley at mdshw5@gmail.com for support and bug reports. + This tool extracts reads from sra archives using sam-dump. + Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. + The sam-dump program is developed at NCBI, and is available at: http://github.com/ncbi/sra-tools + Please submit inquiries and bug reports to http://github.com/mdshw5/sra-tools-galaxy. </help> </tool>