diff sra_pileup.xml @ 28:fdc981664a43

Update to most recent GitHub version passing tests.
author Matt Shirley <mdshw5@gmail.com>
date Wed, 01 Apr 2015 12:35:38 -0400
parents 393a04ec0fa9
children
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--- a/sra_pileup.xml	Mon Mar 30 22:40:59 2015 -0400
+++ b/sra_pileup.xml	Wed Apr 01 12:35:38 2015 -0400
@@ -42,10 +42,18 @@
   <requirements>
     <requirement type="package" version="2.4.5">sra_toolkit</requirement>
   </requirements>
+  <tests>
+    <test>
+      <param name="input_select" value="accession_number"/>
+      <param name="accession" value="SRR925743"/>
+      <param name="region" value="17:41243452-41277500"/>
+      <output name="output" file="sra_pileup_result.pileup" ftype="pileup" />
+    </test>
+  </tests>
   <help>
-    This tool produces pileup format from sra archives using sra-pileup.
-    Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies.
-    The sra-pileup program is developed at NCBI, and is available at: http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software.
-    Contact Matt Shirley at mdshw5@gmail.com for support and bug reports.
+      This tool extracts reads from sra archives using sam-dump.
+      Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies.
+      The sam-dump program is developed at NCBI, and is available at: http://github.com/ncbi/sra-tools
+      Please submit inquiries and bug reports to http://github.com/mdshw5/sra-tools-galaxy.
   </help>
 </tool>