# HG changeset patch
# User Matt Shirley <mdshw5@gmail.com>
# Date 1427763546 14400
# Node ID 281f34ece271f46082c3cd22ef2ed61ef4786a19
# Parent  6d25dfb4dbb404e16fb3994d166e42f26dbaede1
debug

diff -r 6d25dfb4dbb4 -r 281f34ece271 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Mar 30 20:44:18 2015 -0400
+++ b/tool_dependencies.xml	Mon Mar 30 20:59:06 2015 -0400
@@ -17,6 +17,7 @@
         <action type="change_directory">../ngs/ngs-sdk</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build</action>
         <action type="change_directory">../../sra-tools</action>
+        <action type="shell_command">echo $PWD</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR --with-magic-prefix=/dev/null</action>
         <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/ncbi/default.kfg</action>
         <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>