# HG changeset patch
# User Matt Shirley <mdshw5@gmail.com>
# Date 1427740069 14400
# Node ID d45b5bdcff3fd0cec1413fc621967f10bc0b1d11
# Parent  91558de676f4622a077513add9589c66b4160c49
Don't use builtin change_directory directive

diff -r 91558de676f4 -r d45b5bdcff3f tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Mar 30 14:06:16 2015 -0400
+++ b/tool_dependencies.xml	Mon Mar 30 14:27:49 2015 -0400
@@ -15,14 +15,14 @@
         <action type="shell_command">git clone https://github.com/ncbi/sra-tools.git</action>
         <action type="shell_command">git clone https://github.com/ncbi/ncbi-vdb.git</action>
         <action type="shell_command">git clone https://github.com/ncbi/ngs.git</action>
-        <action type="change_directory">$NCBI/ncbi-vdb</action>
+        <action type="shell_command">cd $NCBI/ncbi-vdb</action>
         <action type="shell_command">git checkout bf5ffdd</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$BUILD</action>
-        <action type="change_directory">$NCBI/ngs</action>
+        <action type="shell_command">cd $NCBI/ngs</action>
         <action type="shell_command">git checkout 3a7a0ed</action>
-        <action type="change_directory">$NCBI/ngs/ngs-sdk</action>
+        <action type="shell_command">cd $NCBI/ngs/ngs-sdk</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$BUILD</action>
-        <action type="change_directory">$NCBI/sra-tools</action>
+        <action type="shell_command">cd $NCBI/sra-tools</action>
         <action type="shell_command">git checkout 4ef7ea0</action>
         <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$BUILD --with-ncbi-vdb-build=$BUILD --with-ncbi-vdb-sources=$NCBI/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR --with-magic-prefix=/dev/null</action>
         <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/ncbi/default.kfg</action>