Mercurial > repos > matt-shirley > ncbi_sra_toolkit

changeset 24:22d9fe442c50

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This is coming together.
author Matt Shirley <mdshw5@gmail.com>
date Mon, 30 Mar 2015 21:33:57 -0400
parents b94593ba997b
children 393a04ec0fa9
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Mar 30 21:23:35 2015 -0400
+++ b/tool_dependencies.xml	Mon Mar 30 21:33:57 2015 -0400
@@ -15,7 +15,7 @@
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
             make
             make install
-            cd $INSTALL_DIR/ngs/ngs-sdk
+            cd $INSTALL_DIR/src/ngs/ngs-sdk
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
             make
             make install
@@ -23,7 +23,8 @@
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR
             make
             make install
-            sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/lib64/ncbi/default.kfg
+            cd $INSTALL_DIR/bin
+            ./vdb-config -s "cache-enabled = false"
         </action>
         <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>
       </actions>