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comparison sra_fetch.xml @ 6:20a054a7e2fd draft

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Updated wrapper script.
author Matthew Shirley <mdshw5@gmail.com>
date Wed, 14 Nov 2012 13:36:21 -0500
parents 8ce70ee5f335
children d7708f338c82
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5:f74bbb22bf62 6:20a054a7e2fd
1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0">
2 <description> by accession from NCBI SRA.</description> 2 <description> by accession from NCBI SRA.</description>
3 <command interpreter="python">sra_fetch.py $accession > $output</command> 3 <command interpreter="python">sra_fetch.py $accession $output</command>
4 <inputs> 4 <inputs>
5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> 5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/>
6 </inputs> 6 </inputs>
7 <outputs> 7 <outputs>
8 <data format="sra" name="output"/> 8 <data format="sra" name="output"/>