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comparison sra_fetch.xml @ 4:8ce70ee5f335 draft

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Updated wrapper script. First version that should work properly.
author Matthew Shirley <mdshw5@gmail.com>
date Wed, 14 Nov 2012 13:13:32 -0500
parents abdb4762ebcb
children 20a054a7e2fd
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3:01dec8611542 4:8ce70ee5f335
1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> 1 <tool id="sra_fetch" name="Fetch SRA" version="1.0.0">
2 <description> by accession from NCBI SRA.</description>
3 <command interpreter="python">sra_fetch.py $accession > $output</command>
4 <inputs>
5 <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/>
6 </inputs>
7 <outputs>
8 <data format="sra" name="output"/>
9 </outputs>
10 <requirements>
11 <requirement type="python">sra_fetch.py</requirement>
12 </requirements>
13 <help>
14 This tool fetches SRA archives from NCBI over FTP using the python ftplib.
15 </help>
2 </tool> 16 </tool>