Mercurial > repos > mb2013 > nepenthes_3dpca
comparison PCA_plot.xml @ 8:0cb68fb9010f draft
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| author | mb2013 |
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| date | Tue, 20 May 2014 03:26:49 -0400 |
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| 7:5aaede6275f9 | 8:0cb68fb9010f |
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| 1 <tool id="PCA_plot" name="PCA_plot"> | |
| 2 <description>Plottool for Principal Component </description> | |
| 3 <command interpreter="Rscript">PCA_plot.R $input "$title" "$x_label" "$y_label" $x_column $y_column $names $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="csv" label="PCA coordinates" /> | |
| 6 <param name = "title" size = "30" type = "text" value = "" label = "Main Title"/> | |
| 7 <param name = "x_label" size = "30" type = "text" value = "" label = "x axis label"/> | |
| 8 <param name = "y_label" size = "30" type = "text" value = "" label = "y axis label"/> | |
| 9 <param name = "x_column" size = "2" type = "integer" value = "1" label = "pca x axis"/> | |
| 10 <param name = "y_column" size = "2" type = "integer" value = "2" label = "pca y axis"/> | |
| 11 <param name = "names" type = "data" format = "csv" label = "data names"/> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data format="png" name="output" /> | |
| 15 </outputs> | |
| 16 | |
| 17 | |
| 18 <help> | |
| 19 **Function** | |
| 20 | |
| 21 Plottool for plotting of Principal Components | |
| 22 | |
| 23 **Input file** | |
| 24 | |
| 25 Principal Components coordinates (csv format) | |
| 26 | |
| 27 sample names (csv format) | |
| 28 | |
| 29 **Tip** | |
| 30 | |
| 31 Use **PCA** to generate Principal Components | |
| 32 | |
| 33 Use the sample names of **DtaConverter** or create your own 'sample name file' in .csv format | |
| 34 </help> | |
| 35 | |
| 36 </tool> |