Mercurial > repos > mb2013 > nepenthes_3dpca

comparison Csize_plot.xml @ 4:22dfb371b509 draft

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author mb2013
date Tue, 20 May 2014 03:25:48 -0400
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3:c2761ec99e82 4:22dfb371b509
1 <tool id="Csize_plot" name="Csize_plot">
2 <description>Plottool for Principal Component and Centroid size</description>
3 <command interpreter="Rscript">Csize_plot.R $input_PCA $input_Csize "$title" "$x_label" "$y_label" $x_column $names $output</command>
4 <inputs>
5 <param name="input_PCA" type="data" format="csv" label="PC" />
6 <param name="input_Csize" type="data" format="csv" label="Csize procrustes" />
7 <param name = "title" size = "30" type = "text" value = "" label = "Main Title"/>
8 <param name = "x_label" size = "30" type = "text" value = "" label = "x axis label"/>
9 <param name = "y_label" size = "30" type = "text" value = "" label = "y axis label"/>
10 <param name = "x_column" size = "2" type = "text" value = "1" label = "PC "/>
11 <param name = "names" type = "data" format = "csv" label = "sample names"/>
12 </inputs>
13 <outputs>
14 <data format="png" name="output" />
15 </outputs>
16
17
18 <help>
19 **Function**
20
21 Plottool for plotting of Principal Component with Centroid size
22
23 **Input file**
24
25 Principal Components coordinates (csv format)
26
27 centroid size of samples (csv format)
28
29 **Tip**
30
31 Use **PCA** to generate Principal Components
32
33 Use **Procrustes** to generate centroid size
34
35
36 </help>
37
38 </tool>