Mercurial > repos > mbernt > fasta_regex_finder

diff fastaregexfinder.xml @ 1:9a811adb714f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/bioinformatics-cafe commit c318cd3f894f89c13d7eb257678673da70f72212
author iuc
date Wed, 25 Jan 2023 14:03:52 +0000
parents 269c627ae9f4
children
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line diff
--- a/fastaregexfinder.xml	Wed Jun 20 11:06:57 2018 -0400
+++ b/fastaregexfinder.xml	Wed Jan 25 14:03:52 2023 +0000
@@ -1,14 +1,15 @@
-<tool id="fasta_regex_finder" name="fasta_regex_finder" version="0.1.0">
+<tool id="fasta_regex_finder" name="Fasta regular expression finder" version="0.1.0">
     <description>
         Search in fasta for regexp match
     </description>
     <requirements>
+        <requirement type="package" version="3.8">python</requirement>
     </requirements>
-    <version_command>python $__tool_directory__/fastaregexfinder.py --version</version_command>
+    <version_command>python '$__tool_directory__/fastaregexfinder.py' --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
-python $__tool_directory__/fastaregexfinder.py 
---fasta "$input"
---regex "$regex"
+python '$__tool_directory__/fastaregexfinder.py'
+--fasta '$input'
+--regex '$regex'
 #if $settings.advanced == "advanced"
     $settings.matchcase
     $settings.noreverse
@@ -18,7 +19,7 @@
     #end if
 #end if
 --quiet
-> $output
+> '$output'
     ]]></command>
     <inputs>
         <param type="data" name="input" format="fasta" />