Mercurial > repos > mbernt > longorf

comparison test-data/test_input.fasta @ 1:1c4b24e9bb16 draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/blob/master/tools/longorf/ commit 5be33ea99532ab3abb000564af4c63c81c4ccd87
author mbernt
date Mon, 16 Jul 2018 11:01:52 -0400
parents ec898924d8c7
children
comparison
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0:ec898924d8c7 1:1c4b24e9bb16
1 >14520830-14521117(-)_1 [2 - 37] 1 >STRG.4.1(-)_1 [3 - 77]
2 KPLENISASREF 2 PNHCLRGHESPETRQSPLSGKRIPS
3 >14520830-14521117(-)_2 [3 - 47] 3 >STRG.4.1(-)_2 [59 - 88]
4 SPWRIFQPAENFDLQ 4 WKEDPLIVCP
5 >14520830-14521117(-)_3 [41 - 94] 5 >STRG.4.1(-)_3 [92 - 127]
6 LAVGFGLIFLRSGWMPCL 6 WNRERYFQGFGL
7 >14520830-14521117(-)_4 [63 - 152] 7 >STRG.4.1(-)_4 [131 - 268]
8 FSYDLGGCLACDSCSSYSPNEGQCPARKLE 8 LPTQKQKDRWGTHTLERFGFTVPTMPAVISLFTETNPSSQITSTQD
9 >14520830-14521117(-)_5 [146 - 175] 9 >STRG.4.1(-)_5 [81 - 332]
10 VGMMDLCSET 10 SAPDGIGKDTSRGSDYNCQPRNKRTAGGLTPWRDLGSQCPQCQRLFHYLRRRIPPVRSLQ
11 >14520830-14521117(-)_6 [156 - 200] 11 LKTKFWRHPDHLGTHRLLGVPAEN
12 WTCVQRLNRTNKQNK 12 >STRG.4.1(-)_6 [272 - 379]
13 >14520830-14521117(-)_7 [1 - 240] 13 VLETPRPSGHAQATWGSCGELSSQMQMESAMMPSTW
14 KAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSAPHVSWNDGPVFRDLT 14 >STRG.4.1(-)_7 [366 - 437]
15 EPTSKTSENRKKEEDTGINS 15 CPLRGRGTGRSHGAAGHAVPPNRH
16 >14520830-14521117(-)_8 [179 - 325] 16 >STRG.4.1(-)_8 [465 - 518]
17 QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRGTKPLENISASREF 17 KRYGMCCVYLDKFVGGCG
18 >14520830-14521117(-)_9 [204 - 335] 18 >STRG.4.1(-)_9 [383 - 565]
19 EQEKGRGHWNQFLRVALLGFSSIPSFVGQSPWRIFQPAENFDLQ 19 GHWTKPWSCGACGTTQSTLRPRSSEPIKALRNVLCLPGQICWWLWLSWMGRNKKPWTWFP
20 >14520830-14521117(-)_10 [329 - 382] 20 W
21 LAVGFGLIFLRSGWMPCL 21 >STRG.4.1(-)_10 [599 - 664]
22 >14520830-14521117(-)_11 [351 - 440] 22 SSEWWSWWTSASSPSTPVGRSS
23 FSYDLGGCLACDSCSSYSPNEGQCPARKLE 23 >STRG.4.1(-)_11 [522 - 665]
24 >14520830-14521117(-)_12 [434 - 463] 24 AGWVGTRSLGPGSLGDQRGPGGALPDRRSGGRGGHRRHPHQLPWGEAA
25 VGMMDLCSET 25 >STRG.4.1(-)_12 [1 - 666]
26 >14520830-14521117(-)_13 [444 - 488] 26 DPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGE
27 WTCVQRLNRTNKQNK 27 IWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGER
28 >14520830-14521117(-)_14 [244 - 528] 28 HDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQ
29 ELHYLVFLPFQVSWDKAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSA 29 EALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQR
30 PHVSWNDGPVFRDLTEPTSKTSENRKKEEDTGINS 30 >STRG.4.1(-)_13 [665 - 594] (REVERSE SENSE)
31 >14520830-14521117(-)_15 [467 - 574] 31 RCFSPRELMGMTPMSTTTTTPTIR
32 QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRG 32 >STRG.4.1(-)_14 [631 - 491] (REVERSE SENSE)
33 >14520830-14521117(-)_16 [492 - 575] 33 RRCPPRPPLRRSGSAPPGPRWSPREPGPRLLVPTHPAQPQPPTNLSR
34 EQEKGRGHWNQFLRVALLGFSSIPSFVG 34 >STRG.4.1(-)_15 [590 - 375] (REVERSE SENSE)
35 >14520830-14521117(-)_17 [532 - 576] 35 CSSRTTLVTKGTRSKASCSDPSSSTTTTNKFVQVNTAHSVTLLWALMTEVSMSIGWYRMP
36 ELHYLVFLPFQVSWD 36 RSSMASSSAPTT
37 >14520830-14521117(-)_18 [575 - 543] (REVERSE SENSE) 37 >STRG.4.1(-)_16 [448 - 341] (REVERSE SENSE)
38 SHETWNGRKTK 38 PRSQCRLGGTACPAAPWLRPVPLPRRGHHGALHLHL
39 >14520830-14521117(-)_19 [574 - 524] (REVERSE SENSE) 39 >STRG.4.1(-)_17 [371 - 312] (REVERSE SENSE)
40 PTKLGMEEKPSSATLKN 40 RASWRSPFASVSSVLRRNPK
41 >14520830-14521117(-)_20 [576 - 466] (REVERSE SENSE) 41 >STRG.4.1(-)_18 [666 - 271] (REVERSE SENSE)
42 VPRNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC 42 ALLLPTGVDGDDADVHHDHHSDDQVVLLQDHVGHQGNQVQGFLFRPIQLNHNHQQICPGK
43 >14520830-14521117(-)_21 [520 - 458] (REVERSE SENSE) 43 HSTFRNAFMGSDDRGLNVDWVVPHAPQLHGFVQCPYHVEGIMALSICICELSSPQEPQVA
44 FQCPLPFSCSHLFCLLVLLSL 44 CACPDGLGVSKT
45 >14520830-14521117(-)_22 [454 - 401] (REVERSE SENSE) 45 >STRG.4.1(-)_19 [337 - 260] (REVERSE SENSE)
46 TQVHHSNLRAGHCPSFGE 46 AQFSAGTPSSLCVPRWSGCLQNLVLS
47 >14520830-14521117(-)_23 [397 - 359] (REVERSE SENSE) 47 >STRG.4.1(-)_20 [308 - 255] (REVERSE SENSE)
48 ELQLSQARHPPRS 48 PVRAQMVWVSPKLSLELK
49 >14520830-14521117(-)_24 [355 - 311] (REVERSE SENSE) 49 >STRG.4.1(-)_21 [256 - 224] (REVERSE SENSE)
50 ENQTKSYCKSKFSAG 50 SDLTGGIRLRK
51 >14520830-14521117(-)_25 [539 - 255] (REVERSE SENSE) 51 >STRG.4.1(-)_22 [246 - 169] (REVERSE SENSE)
52 CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI 52 LEGFVSVNSEITAGIVGTVNPNLSKV
53 VGKSNQILLQVKILCWLKYSPGALSHETWNGRKTK 53 >STRG.4.1(-)_23 [217 - 128] (REVERSE SENSE)
54 >14520830-14521117(-)_26 [307 - 236] (REVERSE SENSE) 54 NNRWHCGHCEPKSLQGVSPPAVLLFLGWQL
55 NILQGLCPTKLGMEEKPSSATLKN 55 >STRG.4.1(-)_24 [188 - 78] (REVERSE SENSE)
56 >14520830-14521117(-)_27 [462 - 178] (REVERSE SENSE) 56 TQISPRCESPSGPFVSGLAIIIRTPGSIFPDSIRGRL
57 VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGFVP 57 >STRG.4.1(-)_25 [165 - 58] (REVERSE SENSE)
58 RNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC 58 VPQRSFCFWVGNYNPNPWKYLSRFHQGQTMRGSSFH
59 >14520830-14521117(-)_28 [232 - 170] (REVERSE SENSE) 59 >STRG.4.1(-)_26 [74 - 18] (REVERSE SENSE)
60 FQCPLPFSCSHLFCLLVLLSL 60 GDPLSTKRTLSCLRALMST
61 >14520830-14521117(-)_29 [166 - 113] (REVERSE SENSE) 61 >STRG.4.1(-)_27 [124 - 2] (REVERSE SENSE)
62 TQVHHSNLRAGHCPSFGE 62 SEPLEVSFPIPSGADYEGILFPLSGLCRVSGLSCPRRQWLG
63 >14520830-14521117(-)_30 [109 - 71] (REVERSE SENSE) 63 >STRG.4.1(-)_28 [54 - 1] (REVERSE SENSE)
64 ELQLSQARHPPRS 64 ADSVVSQGSHVHVDSGWV
65 >14520830-14521117(-)_31 [67 - 23] (REVERSE SENSE) 65 >STRG.6.1(-)_1 [1 - 63]
66 ENQTKSYCKSKFSAG 66 NWDASWRKDVSRSHQCLLPFH
67 >14520830-14521117(-)_32 [251 - 3] (REVERSE SENSE) 67 >STRG.6.1(-)_2 [24 - 182]
68 CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI 68 RCLTQPPVPSAVPLSCSVNFTPLEKWPSAWTLTVDWDLSSGASAVCILGTSPS
69 VGKSNQILLQVKILCWLKYSPGA 69 >STRG.6.1(-)_3 [94 - 195]
70 >14520830-14521117(-)_33 [174 - 1] (REVERSE SENSE) 70 RSGHLPGPLLWTGICPLVPLQCVFWAPVHPDPAL
71 VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGF 71 >STRG.6.1(-)_4 [186 - 233]
72 >103089310-103089560(-)_1 [2 - 37] 72 SRPLSWKPTPPCGFLP
73 GTSEKFLKILLS 73 >STRG.6.1(-)_5 [2 - 250]
74 >103089310-103089560(-)_2 [24 - 92] 74 TGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSI
75 RFYYHRYLFWFCVSVLSADGPKL 75 LIPPSELETNPALWLLAVSQYKV
76 >103089310-103089560(-)_3 [13 - 117] 76 >STRG.6.1(-)_6 [199 - 252]
77 KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK 77 AGNQPRLVASCRESVQSP
78 >103089310-103089560(-)_4 [138 - 167] 78 >STRG.6.1(-)_7 [237 - 121] (REVERSE SENSE)
79 TACIWLHCGL 79 LTARSHKAGLVSSSEGGIRMDWCPEYTLQRHQRTNPSPQ
80 >103089310-103089560(-)_5 [180 - 260] 80 >STRG.6.1(-)_8 [251 - 93] (REVERSE SENSE)
81 NHPYVSVSGYTRKRKESQSGTKSGRYV 81 GLCTDSRQEATRRGWFPAQRAGSGWTGAQNTHCRGTRGQIPVHSKGPGRWPLL
82 >103089310-103089560(-)_6 [41 - 271] 82 >STRG.6.1(-)_9 [117 - 85] (REVERSE SENSE)
83 ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK 83 GSRQMATSLEG
84 ERVSEWNKEWEVRLKSF 84 >STRG.6.1(-)_10 [81 - 34] (REVERSE SENSE)
85 >103089310-103089560(-)_7 [127 - 288] 85 SSHCSLMERQKALVAA
86 NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRVGGTSEKFLKILLS 86 >STRG.6.1(-)_11 [250 - 14] (REVERSE SENSE)
87 >103089310-103089560(-)_8 [275 - 343] 87 DFVLTHGKKPQGGVGFQLRGRDQDGLVPRIHTAEAPEDKSQSTVRVQADGHFSRGVKFTL
88 RFYYHRYLFWFCVSVLSADGPKL 88 QLNGTAEGTGGCVRHLYAS
89 >103089310-103089560(-)_9 [264 - 368] 89 >STRG.6.1(-)_12 [62 - 3] (REVERSE SENSE)
90 KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK 90 WNGRRHWWLRETSLRQLASQ
91 >103089310-103089560(-)_10 [389 - 418] 91 >STRG.6.1(-)_13 [30 - 1] (REVERSE SENSE)
92 TACIWLHCGL 92 DIFTPASIPV
93 >103089310-103089560(-)_11 [378 - 500] 93 >STRG.8.1(-)_1 [18 - 56]
94 NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRV 94 RTSKKPNGRDPTV
95 >103089310-103089560(-)_12 [292 - 501] 95 >STRG.8.1(-)_2 [60 - 95]
96 ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK 96 RLAKAAVVCHRV
97 ERVSEWNKEW 97 >STRG.8.1(-)_3 [99 - 137]
98 >103089310-103089560(-)_13 [431 - 502] 98 TSLQTAPRLVPTH
99 NHPYVSVSGYTRKRKESQSGTKSG 99 >STRG.8.1(-)_4 [2 - 205]
100 >103089310-103089560(-)_14 [500 - 447] (REVERSE SENSE) 100 VTPAIKDFQKAQRERSHSLKVGQSCCGLSQSLNISPNRPETGSHTLKMPITTLRILSTRR
101 HSLFHSETLSFSSCIQIH
102 >103089310-103089560(-)_15 [480 - 436] (REVERSE SENSE)
103 DSFLFLVYPDTLTYG
104 >103089310-103089560(-)_16 [502 - 383] (REVERSE SENSE)
105 PTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA
106 >103089310-103089560(-)_17 [426 - 361] (REVERSE SENSE)
107 KCHKPQWSHIHAVQPDFTLIFF
108 >103089310-103089560(-)_18 [357 - 289] (REVERSE SENSE)
109 YRLHYNFGPSAESTDTQNQNKYL
110 >103089310-103089560(-)_19 [379 - 233] (REVERSE SENSE)
111 FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTYLPLFVPL
112 >103089310-103089560(-)_20 [279 - 196] (REVERSE SENSE)
113 NLQKLFRRTSHSLFHSETLSFSSCIQIH
114 >103089310-103089560(-)_21 [229 - 185] (REVERSE SENSE)
115 DSFLFLVYPDTLTYG
116 >103089310-103089560(-)_22 [443 - 132] (REVERSE SENSE)
117 HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF
118 SDVPPTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA
119 >103089310-103089560(-)_23 [175 - 110] (REVERSE SENSE)
120 KCHKPQWSHIHAVQPDFTLIFF
121 >103089310-103089560(-)_24 [106 - 38] (REVERSE SENSE)
122 YRLHYNFGPSAESTDTQNQNKYL
123 >103089310-103089560(-)_25 [128 - 3] (REVERSE SENSE)
124 FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTY
125 >103089310-103089560(-)_26 [192 - 1] (REVERSE SENSE)
126 HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF
127 SDVP