Mercurial > repos > mbernt > longorf

diff test-data/test_input.fasta @ 0:ec898924d8c7 draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/blob/master/tools/longorf/ commit 8e118a4d24047e2c62912b962e854f789d6ff559
author mbernt
date Wed, 20 Jun 2018 11:02:06 -0400
parents
children 1c4b24e9bb16
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_input.fasta	Wed Jun 20 11:02:06 2018 -0400
@@ -0,0 +1,127 @@
+>14520830-14521117(-)_1 [2 - 37] 
+KPLENISASREF
+>14520830-14521117(-)_2 [3 - 47] 
+SPWRIFQPAENFDLQ
+>14520830-14521117(-)_3 [41 - 94] 
+LAVGFGLIFLRSGWMPCL
+>14520830-14521117(-)_4 [63 - 152] 
+FSYDLGGCLACDSCSSYSPNEGQCPARKLE
+>14520830-14521117(-)_5 [146 - 175] 
+VGMMDLCSET
+>14520830-14521117(-)_6 [156 - 200] 
+WTCVQRLNRTNKQNK
+>14520830-14521117(-)_7 [1 - 240] 
+KAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSAPHVSWNDGPVFRDLT
+EPTSKTSENRKKEEDTGINS
+>14520830-14521117(-)_8 [179 - 325] 
+QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRGTKPLENISASREF
+>14520830-14521117(-)_9 [204 - 335] 
+EQEKGRGHWNQFLRVALLGFSSIPSFVGQSPWRIFQPAENFDLQ
+>14520830-14521117(-)_10 [329 - 382] 
+LAVGFGLIFLRSGWMPCL
+>14520830-14521117(-)_11 [351 - 440] 
+FSYDLGGCLACDSCSSYSPNEGQCPARKLE
+>14520830-14521117(-)_12 [434 - 463] 
+VGMMDLCSET
+>14520830-14521117(-)_13 [444 - 488] 
+WTCVQRLNRTNKQNK
+>14520830-14521117(-)_14 [244 - 528] 
+ELHYLVFLPFQVSWDKAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSA
+PHVSWNDGPVFRDLTEPTSKTSENRKKEEDTGINS
+>14520830-14521117(-)_15 [467 - 574] 
+QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRG
+>14520830-14521117(-)_16 [492 - 575] 
+EQEKGRGHWNQFLRVALLGFSSIPSFVG
+>14520830-14521117(-)_17 [532 - 576] 
+ELHYLVFLPFQVSWD
+>14520830-14521117(-)_18 [575 - 543] (REVERSE SENSE) 
+SHETWNGRKTK
+>14520830-14521117(-)_19 [574 - 524] (REVERSE SENSE) 
+PTKLGMEEKPSSATLKN
+>14520830-14521117(-)_20 [576 - 466] (REVERSE SENSE) 
+VPRNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC
+>14520830-14521117(-)_21 [520 - 458] (REVERSE SENSE) 
+FQCPLPFSCSHLFCLLVLLSL
+>14520830-14521117(-)_22 [454 - 401] (REVERSE SENSE) 
+TQVHHSNLRAGHCPSFGE
+>14520830-14521117(-)_23 [397 - 359] (REVERSE SENSE) 
+ELQLSQARHPPRS
+>14520830-14521117(-)_24 [355 - 311] (REVERSE SENSE) 
+ENQTKSYCKSKFSAG
+>14520830-14521117(-)_25 [539 - 255] (REVERSE SENSE) 
+CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI
+VGKSNQILLQVKILCWLKYSPGALSHETWNGRKTK
+>14520830-14521117(-)_26 [307 - 236] (REVERSE SENSE) 
+NILQGLCPTKLGMEEKPSSATLKN
+>14520830-14521117(-)_27 [462 - 178] (REVERSE SENSE) 
+VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGFVP
+RNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC
+>14520830-14521117(-)_28 [232 - 170] (REVERSE SENSE) 
+FQCPLPFSCSHLFCLLVLLSL
+>14520830-14521117(-)_29 [166 - 113] (REVERSE SENSE) 
+TQVHHSNLRAGHCPSFGE
+>14520830-14521117(-)_30 [109 - 71] (REVERSE SENSE) 
+ELQLSQARHPPRS
+>14520830-14521117(-)_31 [67 - 23] (REVERSE SENSE) 
+ENQTKSYCKSKFSAG
+>14520830-14521117(-)_32 [251 - 3] (REVERSE SENSE) 
+CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI
+VGKSNQILLQVKILCWLKYSPGA
+>14520830-14521117(-)_33 [174 - 1] (REVERSE SENSE) 
+VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGF
+>103089310-103089560(-)_1 [2 - 37] 
+GTSEKFLKILLS
+>103089310-103089560(-)_2 [24 - 92] 
+RFYYHRYLFWFCVSVLSADGPKL
+>103089310-103089560(-)_3 [13 - 117] 
+KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK
+>103089310-103089560(-)_4 [138 - 167] 
+TACIWLHCGL
+>103089310-103089560(-)_5 [180 - 260] 
+NHPYVSVSGYTRKRKESQSGTKSGRYV
+>103089310-103089560(-)_6 [41 - 271] 
+ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK
+ERVSEWNKEWEVRLKSF
+>103089310-103089560(-)_7 [127 - 288] 
+NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRVGGTSEKFLKILLS
+>103089310-103089560(-)_8 [275 - 343] 
+RFYYHRYLFWFCVSVLSADGPKL
+>103089310-103089560(-)_9 [264 - 368] 
+KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK
+>103089310-103089560(-)_10 [389 - 418] 
+TACIWLHCGL
+>103089310-103089560(-)_11 [378 - 500] 
+NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRV
+>103089310-103089560(-)_12 [292 - 501] 
+ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK
+ERVSEWNKEW
+>103089310-103089560(-)_13 [431 - 502] 
+NHPYVSVSGYTRKRKESQSGTKSG
+>103089310-103089560(-)_14 [500 - 447] (REVERSE SENSE) 
+HSLFHSETLSFSSCIQIH
+>103089310-103089560(-)_15 [480 - 436] (REVERSE SENSE) 
+DSFLFLVYPDTLTYG
+>103089310-103089560(-)_16 [502 - 383] (REVERSE SENSE) 
+PTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA
+>103089310-103089560(-)_17 [426 - 361] (REVERSE SENSE) 
+KCHKPQWSHIHAVQPDFTLIFF
+>103089310-103089560(-)_18 [357 - 289] (REVERSE SENSE) 
+YRLHYNFGPSAESTDTQNQNKYL
+>103089310-103089560(-)_19 [379 - 233] (REVERSE SENSE) 
+FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTYLPLFVPL
+>103089310-103089560(-)_20 [279 - 196] (REVERSE SENSE) 
+NLQKLFRRTSHSLFHSETLSFSSCIQIH
+>103089310-103089560(-)_21 [229 - 185] (REVERSE SENSE) 
+DSFLFLVYPDTLTYG
+>103089310-103089560(-)_22 [443 - 132] (REVERSE SENSE) 
+HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF
+SDVPPTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA
+>103089310-103089560(-)_23 [175 - 110] (REVERSE SENSE) 
+KCHKPQWSHIHAVQPDFTLIFF
+>103089310-103089560(-)_24 [106 - 38] (REVERSE SENSE) 
+YRLHYNFGPSAESTDTQNQNKYL
+>103089310-103089560(-)_25 [128 - 3] (REVERSE SENSE) 
+FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTY
+>103089310-103089560(-)_26 [192 - 1] (REVERSE SENSE) 
+HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF
+SDVP