Mercurial > repos > mbernt > maxbin2
view test-data/2/out.log @ 0:35aa0df55a62 draft
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/maxbin2 commit 8e118a4d24047e2c62912b962e854f789d6ff559-dirty
author | mbernt |
---|---|
date | Thu, 28 Jun 2018 08:49:29 -0400 |
parents | |
children |
line wrap: on
line source
MaxBin 2.2.4 Input contig: Bin_Sample3_contigs.fasta out header: out Located abundance file [abundances.tsv] Min contig length: 500 Max iteration: 10 Probability threshold: 0.95 Searching against 107 marker genes to find starting seed contigs for [Bin_Sample3_contigs.fasta]... Try harder to dig out marker genes from contigs. Done data collection. Running MaxBin... Command: /home/berntm/miniconda3/envs/__maxbin2@2.2.4/opt/MaxBin-2.2.4/src/MaxBin -fasta out.contig.tmp -abund out.contig.tmp.abund1 -seed out.seed -out out -min_contig_length 500 -max_run 10 -prob_threshold 0.95 Minimum contig length set to 500. Reading seed list... Looking for seeds in sequences. contig-201_2 [11.293216] contig-201_100 [10.048304] Get 2 seeds. Start EM process. Iteration 1 Iteration 2 Iteration 3 Iteration 4 Iteration 5 Iteration 6 Iteration 7 Iteration 8 Iteration 9 Iteration 10 EM finishes successfully. Classifying sequences based on the EM result. Minimum probability for binning: 0.95 Ignoring 0 bins without any sequences. Number of unclassified sequences: 23 (9.75%) Elapsed time: 0 days 00:00:01 Deleting intermediate files. ========== Job finished ========== Yielded 2 bins for contig (scaffold) file Bin_Sample3_contigs.fasta Here are the output files for this run. Please refer to the README file for further details. Summary file: out.summary Marker counts: out.marker Marker genes for each bin: out.marker_of_each_gene.tar.gz Bin files: out.001.fasta - out.002.fasta Unbinned sequences: out.noclass Marker plot: out.marker.pdf ========== Elapsed Time ========== 0 hours 0 minutes and 3 seconds.