Mercurial > repos > mbernt > maxbin2
view test-data/3/out.idba.out @ 1:864279a0d64b draft
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/maxbin2 commit c003bb1aa5c8c42650b27516f0951e0d67f11857-dirty
author | mbernt |
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date | Tue, 16 Oct 2018 10:28:16 -0400 |
parents | 35aa0df55a62 |
children |
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number of threads 1 reads 21484 long reads 0 extra reads 0 read_length 93 kmer 60 kmers 189823 188895 merge bubble 2 contigs: 292 n50: 586 max: 2560 mean: 547 total length: 159906 n80: 365 aligned 14823 reads confirmed bases: 135234 correct reads: 11116 bases: 300 kmer 20 kmers 228328 228212 merge bubble 14 contigs: 233 n50: 3245 max: 7554 mean: 965 total length: 224992 n80: 896 aligned 19152 reads confirmed bases: 181101 correct reads: 12296 bases: 35 distance mean 1000 sd 0 seed contigs 146 local contigs 466 kmer 40 kmers 227514 227453 merge bubble 6 contigs: 153 n50: 3744 max: 10866 mean: 1506 total length: 230550 n80: 1749 aligned 19655 reads confirmed bases: 186149 correct reads: 12597 bases: 5 distance mean 999.98 sd 0.1398 seed contigs 119 local contigs 306 kmer 60 kmers 225678 225589 merge bubble 3 contigs: 121 n50: 3826 max: 10866 mean: 1897 total length: 229604 n80: 1976 aligned 19732 reads confirmed bases: 186576 correct reads: 12645 bases: 0 distance mean 999.98 sd 0.138491 seed contigs 114 local contigs 242 kmer 80 kmers 222596 222502 merge bubble 2 contigs: 109 n50: 3826 max: 10866 mean: 2099 total length: 228800 n80: 2256 aligned 19712 reads confirmed bases: 186604 correct reads: 12655 bases: 0 distance mean 999.981 sd 0.138243 seed contigs 108 local contigs 218 kmer 100 kmers 219702 219610 merge bubble 0 contigs: 106 n50: 3826 max: 10866 mean: 2152 total length: 228179 n80: 2034 reads 21484 aligned 19623 reads distance mean 999.975 sd 0.155413 expected coverage 0.0899218 edgs 60 contigs: 64 n50: 4891 max: 11700 mean: 3610 total length: 231059 n80: 3499