# HG changeset patch # User iuc # Date 1703104077 0 # Node ID 28a0b1446d2bd279521e5c12a947d6c591860202 # Parent 2bc40bfbcfb4e0de42c1bf45f72b6821e094ea3a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maxbin2/ commit be3f3d0eb7e565cea414babb410e6ae32875c5f2 diff -r 2bc40bfbcfb4 -r 28a0b1446d2b maxbin2.xml --- a/maxbin2.xml Mon Oct 16 07:46:13 2023 +0000 +++ b/maxbin2.xml Wed Dec 20 20:27:57 2023 +0000 @@ -1,4 +1,4 @@ - + clusters metagenomic contigs into bins 2.2.7 @@ -30,7 +30,7 @@ #if $assembly.type == 'individual' ## uncompress .gz reads files if necessary #set $e = $assembly.inputs.reads - #set $identifier = re.sub('[^\s\w\-\\.]', '_', str($e.element_identifier)) + #set $identifier = re.sub('[^\w\-\\.]', '_', str($e.element_identifier)) #if $e.ext.endswith(".gz") gunzip -c '$e' > '$identifier' && echo '$identifier' >> reads_list && @@ -394,6 +394,38 @@ + + + + + + + + + + + + +

+ + + +

+ + + + + +

+ + + + + + + + diff -r 2bc40bfbcfb4 -r 28a0b1446d2b test-data/test4_reads 2.fastqsanger --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test4_reads 2.fastqsanger Wed Dec 20 20:27:57 2023 +0000 @@ -0,0 +1,1948 @@ +@NC_006347.1_63 +AAGCCTTGGCCGGAAATATTTTATTTTGCTTTGTCGGCTACACAGTCCGAACTGCGTGATTCGCTAATGATAGGTGATAGTTGGGAAGCGGATATTACAGGTGCCAATGGCATAGGGATGCATCAGATCAGTCATACCATGGGTGATGGTCAAAAAGACAGGCATTGTTCCCAAGGGGTTAGTCAACGTAAAGAAAGAGGTAAAACAGAGTAAAGCGAAAGGTAAGAGAGTGTCCATAGTTGTATTTTTATG ++ +BBBBBFFFFFFFFFFFFFBFFFFFFBFBFFFFFFFF