Mercurial > repos > mbernt > singularity_scriptrunner

comparison test-data/scripting_images.loc @ 2:2eb0532a911c draft

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
author ufz
date Fri, 11 Apr 2025 15:20:00 +0000
parents 9512201417a5
children
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1:0da37b889932 2:2eb0532a911c
1 # <id> <name> <image_name> <interpreter> <container_type> <container_params> 1 # <id> <name> <image_name> <interpreter> <container_type> <container_params>
2 2
3 # docker://continuumio/anaconda3 3 # docker://python_3.10
4 python_continuumio_anaconda python (continuumio/anaconda) /tmp/anaconda3_latest.sif python singularity --cleanenv --network none --no-mount bind-paths 4 python_python python (python) /tmp/python_3.10-slim.sif python mkdir -p "$HOME/.local/lib/python3.10/site-packages" && singularity --no-home --cleanenv --home $HOME --env PYTHONUSERBASE="$HOME/.local"
5
6 # docker://python_3.10
7 python_python_noinstall python (python no install) /tmp/python_3.10-slim.sif python singularity --no-home --cleanenv
8
5 9
6 # docker://rocker/tidyverse 10 # docker://rocker/tidyverse
7 r_rocker_tidyverse R (tidyverse) /tmp/tidyverse_latest.sif Rscript apptainer 11 r_rocker_tidyverse R (tidyverse) /tmp/tidyverse_latest.sif Rscript mkdir -p "$HOME/custom_R_library" && singularity --no-home --cleanenv --home $HOME --env R_LIBS_USER="$HOME/custom_R_library"
12
13 bash_rocker_tidyverse bash (R tidyverse) /tmp/tidyverse_latest.sif bash singularity --no-home --cleanenv --home $HOME
14
8 15
9 # docker://rocker/tidyverse 16 # docker://rocker/tidyverse
10 bash_continuumio_anaconda bash (continuumio/anaconda) /tmp/anaconda3_latest.sif bash apptainer --cleanenv --network none --no-mount bind-paths 17 bash_python bash (python) /tmp/python_3.10-slim.sif bash singularity --no-home --cleanenv --home $HOME