|
7
|
1 <tool id="PrepareFastqLight" name="PrepareFastqLight" version="1.01">
|
|
0
|
2 <description>Fastq preparation</description>
|
|
|
3 <command interpreter="perl">
|
|
7
|
4 PrepareFastqLight.pl -read1_file $input_read1_file -read2_file $input_read2_file -output1 $output_read1_file -output2 $output_read2_file -log_file $log_file -type $quality_type -min_quality $min_quality -min_length $min_length
|
|
0
|
5 </command>
|
|
|
6 <inputs>
|
|
7
|
7 <param name="input_read1_file" type="data" format="txt,fastq" label="Select a suitable FASTQ READ 1 file from your history"/>
|
|
|
8 <param name="input_read2_file" type="data" format="txt,fastq" label="Select a suitable FASTQ READ 2 file from your history"/>
|
|
|
9 <param name="quality_type" type="select" label="Select input quality format">
|
|
|
10 <option value="sanger">Sanger</option>
|
|
|
11 <option value="illumina">Illumina 1.3-1.7</option>
|
|
|
12 </param>
|
|
|
13 <param name="min_quality" type="integer" value="30" label="Minimum quality for 5' and 3' trimming "/>
|
|
|
14 <param name="min_length" type="integer" value="30" label="Minimum sequence length after trimming"/>
|
|
0
|
15 </inputs>
|
|
|
16 <outputs>
|
|
7
|
17 <data name="output_read1_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
|
|
|
18 <data name="output_read2_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
|
|
|
19 <data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/>
|
|
0
|
20 </outputs>
|
|
|
21
|
|
|
22 <help>
|
|
|
23
|
|
|
24
|
|
|
25
|
|
|
26 </help>
|
|
|
27 </tool>
|
