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1 <tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="0.01">
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2 <description>Filter SAM file for uniq and well mapped pair-end reads</description>
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3 <command interpreter="perl">
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4 filtersam_mapped_and_unique.pl $input_sam_file > $output_file
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5 </command>
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6 <inputs>
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7 <param name="input_sam_file" type="data" format="sam" label="Select a suitable input SAM file from your history"/>
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8 </inputs>
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9 <outputs>
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10 <data name="output_file" format="sam" label="${tool.name} on ${on_string}"/>
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11 </outputs>
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12
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13 <help>
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14
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15
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16
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17 </help>
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18 </tool>
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