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1 <tool id="SplitFileUpTo10x" name="SplitFileUpTo10x" version="1.00">
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2 <description>Split file in 2-10</description>
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3 <command interpreter="perl">
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4 SplitFileUpTo10x.pl $input_file $line_number $file_number $output_file1 $output_file2 $output_file3 $output_file4 $output_file5 $output_file6 $output_file7 $output_file8 $output_file9 $output_file10
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5 </command>
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6 <inputs>
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7 <param name="out_format" type="select" label="Format">
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8 <option value="pileup">pileup</option>
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9 <option value="fastq">fastq</option>
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10 <option value="fastqsanger">fastqsanger</option>
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11 <option value="sam">sam</option>
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12 <option value="fasta">fasta</option>
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13 <option value="tabular">tabular</option>
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14 </param>
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15 <param name="input_file" type="data" format="txt,tabular,astq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/>
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16 <param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/>
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17 <param name="file_number" type="integer" value="4" label="Number of split files"/>
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18 </inputs>
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19 <outputs>
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20 <data name="output_file1" format="txt" label="PART1 on ${on_string}">
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21 <change_format>
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22 <when input="out_format" value="pileup" format="pileup" />
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23 <when input="out_format" value="fastq" format="fastq" />
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24 <when input="out_format" value="sam" format="sam" />
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25 <when input="out_format" value="fasta" format="fasta" />
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26 <when input="out_format" value="tabular" format="tabular" />
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27 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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28 </change_format>
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29 </data>
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30 <data name="output_file2" format="txt" label="PART2 on ${on_string}">
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31 <change_format>
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32 <when input="out_format" value="pileup" format="pileup" />
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33 <when input="out_format" value="fastq" format="fastq" />
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34 <when input="out_format" value="sam" format="sam" />
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35 <when input="out_format" value="fasta" format="fasta" />
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36 <when input="out_format" value="tabular" format="tabular" />
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37 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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38 </change_format>
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39 </data>
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40 <data name="output_file3" format="txt" label="PART3 on ${on_string}">
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41 <change_format>
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42 <when input="out_format" value="pileup" format="pileup" />
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43 <when input="out_format" value="fastq" format="fastq" />
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44 <when input="out_format" value="sam" format="sam" />
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45 <when input="out_format" value="fasta" format="fasta" />
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46 <when input="out_format" value="tabular" format="tabular" />
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47 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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48 </change_format>
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49 </data>
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50 <data name="output_file4" format="txt" label="PART4 on ${on_string}">
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51 <change_format>
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52 <when input="out_format" value="pileup" format="pileup" />
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53 <when input="out_format" value="fastq" format="fastq" />
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54 <when input="out_format" value="sam" format="sam" />
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55 <when input="out_format" value="fasta" format="fasta" />
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56 <when input="out_format" value="tabular" format="tabular" />
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57 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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58 </change_format>
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59 </data>
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60 <data name="output_file5" format="txt" label="PART5 on ${on_string}">
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61 <change_format>
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62 <when input="out_format" value="pileup" format="pileup" />
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63 <when input="out_format" value="fastq" format="fastq" />
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64 <when input="out_format" value="sam" format="sam" />
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65 <when input="out_format" value="fasta" format="fasta" />
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66 <when input="out_format" value="tabular" format="tabular" />
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67 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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68 </change_format>
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69 </data>
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70 <data name="output_file6" format="txt" label="PART6 on ${on_string}">
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71 <change_format>
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72 <when input="out_format" value="pileup" format="pileup" />
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73 <when input="out_format" value="fastq" format="fastq" />
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74 <when input="out_format" value="sam" format="sam" />
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75 <when input="out_format" value="fasta" format="fasta" />
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76 <when input="out_format" value="tabular" format="tabular" />
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77 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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78 </change_format>
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79 </data>
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80 <data name="output_file7" format="txt" label="PART7 on ${on_string}">
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81 <change_format>
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82 <when input="out_format" value="pileup" format="pileup" />
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83 <when input="out_format" value="fastq" format="fastq" />
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84 <when input="out_format" value="sam" format="sam" />
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85 <when input="out_format" value="fasta" format="fasta" />
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86 <when input="out_format" value="tabular" format="tabular" />
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87 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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88 </change_format>
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89 </data>
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90 <data name="output_file8" format="txt" label="PART8 on ${on_string}">
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91 <change_format>
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92 <when input="out_format" value="pileup" format="pileup" />
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93 <when input="out_format" value="fastq" format="fastq" />
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94 <when input="out_format" value="sam" format="sam" />
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95 <when input="out_format" value="fasta" format="fasta" />
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96 <when input="out_format" value="tabular" format="tabular" />
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97 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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98 </change_format>
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99 </data>
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100 <data name="output_file9" format="txt" label="PART9 on ${on_string}">
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101 <change_format>
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102 <when input="out_format" value="pileup" format="pileup" />
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103 <when input="out_format" value="fastq" format="fastq" />
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104 <when input="out_format" value="sam" format="sam" />
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105 <when input="out_format" value="fasta" format="fasta" />
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106 <when input="out_format" value="tabular" format="tabular" />
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107 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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108 </change_format>
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109 </data>
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110 <data name="output_file10" format="txt" label="PART10 on ${on_string}">
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111 <change_format>
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112 <when input="out_format" value="pileup" format="pileup" />
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113 <when input="out_format" value="fastq" format="fastq" />
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114 <when input="out_format" value="sam" format="sam" />
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115 <when input="out_format" value="fasta" format="fasta" />
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116 <when input="out_format" value="tabular" format="tabular" />
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117 <when input="out_format" value="fastqsanger" format="fastqsanger" />
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118 </change_format>
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119 </data>
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120
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121 </outputs>
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122
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123 <help>
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124
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125
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126
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127 </help>
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128 </tool>
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