Mercurial > repos > mcharles > rapsosnp

comparison rapsodyn/SplitFileUpTo10x.xml @ 9:0e7c6fe60646 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author mcharles
date Mon, 20 Oct 2014 05:58:31 -0400
parents
children
comparison
equal deleted inserted replaced
8:d857538d9fea 9:0e7c6fe60646
1 <tool id="SplitFileUpTo10x" name="SplitFileUpTo10x" version="1.00">
2 <description>Split file in 2-10</description>
3 <command interpreter="perl">
4 SplitFileUpTo10x.pl $input_file $line_number $file_number $output_file1 $output_file2 $output_file3 $output_file4 $output_file5 $output_file6 $output_file7 $output_file8 $output_file9 $output_file10
5 </command>
6 <inputs>
7 <param name="out_format" type="select" label="Format">
8 <option value="pileup">pileup</option>
9 <option value="fastq">fastq</option>
10 <option value="fastqsanger">fastqsanger</option>
11 <option value="sam">sam</option>
12 <option value="fasta">fasta</option>
13 <option value="tabular">tabular</option>
14 </param>
15 <param name="input_file" type="data" format="txt,tabular,astq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/>
16 <param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/>
17 <param name="file_number" type="integer" value="4" label="Number of split files"/>
18 </inputs>
19 <outputs>
20 <data name="output_file1" format="txt" label="PART1 on ${on_string}">
21 <change_format>
22 <when input="out_format" value="pileup" format="pileup" />
23 <when input="out_format" value="fastq" format="fastq" />
24 <when input="out_format" value="sam" format="sam" />
25 <when input="out_format" value="fasta" format="fasta" />
26 <when input="out_format" value="tabular" format="tabular" />
27 <when input="out_format" value="fastqsanger" format="fastqsanger" />
28 </change_format>
29 </data>
30 <data name="output_file2" format="txt" label="PART2 on ${on_string}">
31 <change_format>
32 <when input="out_format" value="pileup" format="pileup" />
33 <when input="out_format" value="fastq" format="fastq" />
34 <when input="out_format" value="sam" format="sam" />
35 <when input="out_format" value="fasta" format="fasta" />
36 <when input="out_format" value="tabular" format="tabular" />
37 <when input="out_format" value="fastqsanger" format="fastqsanger" />
38 </change_format>
39 </data>
40 <data name="output_file3" format="txt" label="PART3 on ${on_string}">
41 <change_format>
42 <when input="out_format" value="pileup" format="pileup" />
43 <when input="out_format" value="fastq" format="fastq" />
44 <when input="out_format" value="sam" format="sam" />
45 <when input="out_format" value="fasta" format="fasta" />
46 <when input="out_format" value="tabular" format="tabular" />
47 <when input="out_format" value="fastqsanger" format="fastqsanger" />
48 </change_format>
49 </data>
50 <data name="output_file4" format="txt" label="PART4 on ${on_string}">
51 <change_format>
52 <when input="out_format" value="pileup" format="pileup" />
53 <when input="out_format" value="fastq" format="fastq" />
54 <when input="out_format" value="sam" format="sam" />
55 <when input="out_format" value="fasta" format="fasta" />
56 <when input="out_format" value="tabular" format="tabular" />
57 <when input="out_format" value="fastqsanger" format="fastqsanger" />
58 </change_format>
59 </data>
60 <data name="output_file5" format="txt" label="PART5 on ${on_string}">
61 <change_format>
62 <when input="out_format" value="pileup" format="pileup" />
63 <when input="out_format" value="fastq" format="fastq" />
64 <when input="out_format" value="sam" format="sam" />
65 <when input="out_format" value="fasta" format="fasta" />
66 <when input="out_format" value="tabular" format="tabular" />
67 <when input="out_format" value="fastqsanger" format="fastqsanger" />
68 </change_format>
69 </data>
70 <data name="output_file6" format="txt" label="PART6 on ${on_string}">
71 <change_format>
72 <when input="out_format" value="pileup" format="pileup" />
73 <when input="out_format" value="fastq" format="fastq" />
74 <when input="out_format" value="sam" format="sam" />
75 <when input="out_format" value="fasta" format="fasta" />
76 <when input="out_format" value="tabular" format="tabular" />
77 <when input="out_format" value="fastqsanger" format="fastqsanger" />
78 </change_format>
79 </data>
80 <data name="output_file7" format="txt" label="PART7 on ${on_string}">
81 <change_format>
82 <when input="out_format" value="pileup" format="pileup" />
83 <when input="out_format" value="fastq" format="fastq" />
84 <when input="out_format" value="sam" format="sam" />
85 <when input="out_format" value="fasta" format="fasta" />
86 <when input="out_format" value="tabular" format="tabular" />
87 <when input="out_format" value="fastqsanger" format="fastqsanger" />
88 </change_format>
89 </data>
90 <data name="output_file8" format="txt" label="PART8 on ${on_string}">
91 <change_format>
92 <when input="out_format" value="pileup" format="pileup" />
93 <when input="out_format" value="fastq" format="fastq" />
94 <when input="out_format" value="sam" format="sam" />
95 <when input="out_format" value="fasta" format="fasta" />
96 <when input="out_format" value="tabular" format="tabular" />
97 <when input="out_format" value="fastqsanger" format="fastqsanger" />
98 </change_format>
99 </data>
100 <data name="output_file9" format="txt" label="PART9 on ${on_string}">
101 <change_format>
102 <when input="out_format" value="pileup" format="pileup" />
103 <when input="out_format" value="fastq" format="fastq" />
104 <when input="out_format" value="sam" format="sam" />
105 <when input="out_format" value="fasta" format="fasta" />
106 <when input="out_format" value="tabular" format="tabular" />
107 <when input="out_format" value="fastqsanger" format="fastqsanger" />
108 </change_format>
109 </data>
110 <data name="output_file10" format="txt" label="PART10 on ${on_string}">
111 <change_format>
112 <when input="out_format" value="pileup" format="pileup" />
113 <when input="out_format" value="fastq" format="fastq" />
114 <when input="out_format" value="sam" format="sam" />
115 <when input="out_format" value="fasta" format="fasta" />
116 <when input="out_format" value="tabular" format="tabular" />
117 <when input="out_format" value="fastqsanger" format="fastqsanger" />
118 </change_format>
119 </data>
120
121 </outputs>
122
123 <help>
124
125
126
127 </help>
128 </tool>