Mercurial > repos > mcharles > rapsosnp
comparison rapsodyn/PileupVariant.xml @ 7:3f7b0788a1c4 draft
Uploaded
| author | mcharles |
|---|---|
| date | Tue, 07 Oct 2014 10:34:34 -0400 |
| parents | 442a7c88b886 |
| children | 0a6c1cfe4dc8 |
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| 6:1776b8ddd87e | 7:3f7b0788a1c4 |
|---|---|
| 1 <tool id="PileupVariant" name="PileupVariant" version="0.01"> | 1 <tool id="PileupVariant" name="PileupVariant" version="1.01"> |
| 2 <description>Keep only mpileup line with variant</description> | 2 <description>Keep only mpileup line with variant</description> |
| 3 <command interpreter="perl"> | 3 <command interpreter="perl"> |
| 4 PileupVariant.pl $input_file > $output_file | 4 PileupVariant.pl -input_pileup_file $input_pileup_file -log_file $log_file > $output_pileup_file |
| 5 </command> | 5 </command> |
| 6 <inputs> | 6 <inputs> |
| 7 <param name="input_file" type="data" format="pileup" label="Select a suitable input file from your history"/> | 7 <param name="input_pileup_file" type="data" format="pileup" label="Select a suitable input file from your history"/> |
| 8 </inputs> | 8 </inputs> |
| 9 <outputs> | 9 <outputs> |
| 10 <data name="output_file" format="pileup" label="${tool.name} on ${on_string}"/> | 10 <data name="output_pileup_file" format="pileup" label="${tool.name} on ${on_string}"/> |
| 11 <data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/> | |
| 11 </outputs> | 12 </outputs> |
| 12 | 13 |
| 13 <help> | 14 <help> |
| 14 | 15 |
| 15 | 16 |