Mercurial > repos > mcharles > rapsosnp
comparison rapsodyn/extractseq.xml @ 7:3f7b0788a1c4 draft
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author | mcharles |
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date | Tue, 07 Oct 2014 10:34:34 -0400 |
parents | 442a7c88b886 |
children | 0a6c1cfe4dc8 |
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6:1776b8ddd87e | 7:3f7b0788a1c4 |
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1 <tool id="extractseq" name="extractseq" version="0.03"> | 1 <tool id="extractseq" name="extractseq" version="1.01"> |
2 <description>Extract Sequence around variant position</description> | 2 <description>Extract Sequence around variant position</description> |
3 <command interpreter="perl"> | 3 <command interpreter="perl"> |
4 extractseq.pl -input_variant_file $input_variant_file -input_assembly_file $input_assembly_file -window_length $window_length > $output_file | 4 extractseq.pl -input_variant_file $input_variant_file -input_assembly_file $input_assembly_file -window_length $window_length > $output_file |
5 </command> | 5 </command> |
6 <inputs> | 6 <inputs> |