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comparison rapsodyn/SplitFile4x.xml @ 0:442a7c88b886 draft

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author mcharles
date Wed, 10 Sep 2014 09:18:15 -0400
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-1:000000000000 0:442a7c88b886
1 <tool id="SplitFile4x" name="SplitFile4x" version="0.01">
2 <description>Split file in 4</description>
3 <command interpreter="perl">
4 SplitFile4x.pl $input_file $line_number $output_file1 $output_file2 $output_file3 $output_file4
5 </command>
6 <inputs>
7 <param name="out_format" type="select" label="Format">
8 <option value="pileup">pileup</option>
9 <option value="fastq">fastq</option>
10 <option value="fastqsanger">fastqsanger</option>
11 <option value="sam">sam</option>
12 <option value="fasta">fasta</option>
13 </param>
14 <param name="input_file" type="data" format="fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/>
15 <param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/>
16 </inputs>
17 <outputs>
18 <data name="output_file1" format="txt" label="PART1 on ${on_string}">
19 <change_format>
20 <when input="out_format" value="pileup" format="pileup" />
21 <when input="out_format" value="fastq" format="fastq" />
22 <when input="out_format" value="sam" format="sam" />
23 <when input="out_format" value="fasta" format="fasta" />
24 <when input="out_format" value="fastqsanger" format="fastqsanger" />
25 </change_format>
26 </data>
27 <data name="output_file2" format="txt" label="PART2 on ${on_string}">
28 <change_format>
29 <when input="out_format" value="pileup" format="pileup" />
30 <when input="out_format" value="fastq" format="fastq" />
31 <when input="out_format" value="sam" format="sam" />
32 <when input="out_format" value="fasta" format="fasta" />
33 <when input="out_format" value="fastqsanger" format="fastqsanger" />
34 </change_format>
35 </data>
36 <data name="output_file3" format="txt" label="PART3 on ${on_string}">
37 <change_format>
38 <when input="out_format" value="pileup" format="pileup" />
39 <when input="out_format" value="fastq" format="fastq" />
40 <when input="out_format" value="sam" format="sam" />
41 <when input="out_format" value="fasta" format="fasta" />
42 <when input="out_format" value="fastqsanger" format="fastqsanger" />
43 </change_format>
44 </data>
45 <data name="output_file4" format="txt" label="PART4 on ${on_string}">
46 <change_format>
47 <when input="out_format" value="pileup" format="pileup" />
48 <when input="out_format" value="fastq" format="fastq" />
49 <when input="out_format" value="sam" format="sam" />
50 <when input="out_format" value="fasta" format="fasta" />
51 <when input="out_format" value="fastqsanger" format="fastqsanger" />
52 </change_format>
53 </data>
54
55 </outputs>
56
57 <help>
58
59
60
61 </help>
62 </tool>