Mercurial > repos > mcharles > rapsosnp

diff rapsodyn/SplitFile10x.xml @ 7:3f7b0788a1c4 draft

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author mcharles
date Tue, 07 Oct 2014 10:34:34 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rapsodyn/SplitFile10x.xml	Tue Oct 07 10:34:34 2014 -0400
@@ -0,0 +1,116 @@
+<tool id="SplitFile10x" name="SplitFile10x" version="1.00">
+<description>Split file in 10</description>
+<command interpreter="perl">
+    SplitFile10x.pl $input_file $line_number $output_file1 $output_file2 $output_file3 $output_file4 $output_file5 $output_file6 $output_file7 $output_file8 $output_file9 $output_file10
+</command>
+<inputs>
+<param name="out_format" type="select" label="Format">
+	<option value="pileup">pileup</option>
+	<option value="fastq">fastq</option>
+	<option value="fastqsanger">fastqsanger</option>
+	<option value="sam">sam</option>
+	<option value="fasta">fasta</option>
+</param>
+<param name="input_file"  type="data" format="fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/>
+<param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/>
+</inputs>
+<outputs>
+<data name="output_file1" format="txt" label="PART1 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file2" format="txt" label="PART2 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file3" format="txt" label="PART3 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file4" format="txt" label="PART4 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file5" format="txt" label="PART5 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file6" format="txt" label="PART6 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file7" format="txt" label="PART7 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file8" format="txt" label="PART8 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file9" format="txt" label="PART9 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+<data name="output_file10" format="txt" label="PART10 on ${on_string}">
+	<change_format>
+		<when input="out_format" value="pileup" format="pileup" />
+		<when input="out_format" value="fastq" format="fastq" />
+		<when input="out_format" value="sam" format="sam" />
+		<when input="out_format" value="fasta" format="fasta" />
+		<when input="out_format" value="fastqsanger" format="fastqsanger" />
+	</change_format>
+</data>
+
+</outputs>
+
+<help>
+
+
+
+</help>
+</tool>