Mercurial > repos > mcharles > rapsosnp
diff rapsodyn/filtersam_mapped_and_unique.xml @ 7:3f7b0788a1c4 draft
Uploaded
author | mcharles |
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date | Tue, 07 Oct 2014 10:34:34 -0400 |
parents | 442a7c88b886 |
children | 0a6c1cfe4dc8 |
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--- a/rapsodyn/filtersam_mapped_and_unique.xml Mon Sep 29 03:02:16 2014 -0400 +++ b/rapsodyn/filtersam_mapped_and_unique.xml Tue Oct 07 10:34:34 2014 -0400 @@ -1,13 +1,14 @@ -<tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="0.01"> +<tool id="filtersam_mapped_and_unique" name="filtersam_mapped_and_unique" version="1.01"> <description>Filter SAM file for uniq and well mapped pair-end reads</description> <command interpreter="perl"> - filtersam_mapped_and_unique.pl $input_sam_file > $output_file + filtersam_mapped_and_unique.pl -input_sam_file $input_sam_file -log_file $log_file> $output_sam_file </command> <inputs> -<param name="input_sam_file" type="data" format="sam" label="Select a suitable input SAM file from your history"/> + <param name="input_sam_file" type="data" format="sam" label="Select a suitable input SAM file from your history"/> </inputs> <outputs> - <data name="output_file" format="sam" label="${tool.name} on ${on_string}"/> + <data name="output_sam_file" format="sam" label="${tool.name} on ${on_string}"/> + <data name="log_file" format="txt" label="${tool.name} LOG on ${on_string}"/> </outputs> <help>