--- a/rapsodyn/mpileupfilterandstat.xml	Mon Sep 29 03:02:16 2014 -0400
+++ b/rapsodyn/mpileupfilterandstat.xml	Tue Oct 07 10:34:34 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="mpileupfilterandstat" name="mpileupfilterandstat" version="0.08">
+<tool id="mpileupfilterandstat" name="mpileupfilterandstat" version="1.00">
 <description>Filter mpileup file entry</description>
 <command interpreter="perl">
   #if $stat.do_stat=="YES"
@@ -14,26 +14,26 @@
 </command>
 <inputs>
 <param name="input_file"  type="data" format="pileup" label="Select a suitable input file from your history"/>
-<param name="min_depth" type="integer" value="2" label="Minimum depth at variant position "/>
-<param name="max_depth" type="integer" value="100" label="Maximum depth at variant position "/>
-<param name="min_frequency" type="float" value="1" label="Minimum variant frequency (between 0-1 : 0.5 for 50%) "/>
+<param name="min_depth" type="integer" value="1" label="Minimum depth at variant position "/>
+<param name="max_depth" type="integer" value="500" label="Maximum depth at variant position "/>
+<param name="min_frequency" type="float" value="0" label="Minimum variant frequency (between 0-1 : 0.5 for 50%) "/>
 <param name="min_forward_and_reverse" type="integer" value="0" label="Minimum variant coverage by forward and reverse reads"/>
-<param name="min_distance" type="integer" value="50" label="Minimum physical distance between variant"/>
+<param name="min_distance" type="integer" value="0" label="Minimum physical distance between variant"/>
 <conditional name="stat">
   <param name="do_stat" type="select" label="Compute stats ">
     <option value="NO">NO</option>
     <option value="YES">YES</option>
   </param>
   <when value="YES">
-    <param name="stat_min_depth_min" type="integer" value = "2" label="min_depth - min" />
-    <param name="stat_min_depth_max" type="integer" value = "10" label="min_depth - max" />
-    <param name="stat_min_depth_step" type="integer" value = "2" label="min_depth - step" />
-    <param name="stat_max_depth_min" type="integer" value = "100" label="max_depth - min" />
+    <param name="stat_min_depth_min" type="integer" value = "4" label="min_depth - min" />
+    <param name="stat_min_depth_max" type="integer" value = "20" label="min_depth - max" />
+    <param name="stat_min_depth_step" type="integer" value = "4" label="min_depth - step" />
+    <param name="stat_max_depth_min" type="integer" value = "200" label="max_depth - min" />
     <param name="stat_max_depth_max" type="integer" value = "200" label="max_depth - max" />
     <param name="stat_max_depth_step" type="integer" value = "100" label="max_depth - step" />
     <param name="stat_freq_min" type="float" value = "0.8" label="freq - min" />
     <param name="stat_freq_max" type="float" value = "1" label="freq - max" />
-    <param name="stat_freq_step" type="float" value = "0.1" label="freq - step" />
+    <param name="stat_freq_step" type="float" value = "0.2" label="freq - step" />
     <param name="stat_dist_min" type="integer" value = "0" label="dist - min" />
     <param name="stat_dist_max" type="integer" value = "50" label="dist - max" />
     <param name="stat_dist_step" type="integer" value = "50" label="dist - step" />