--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rapsodyn/extractseq.xml	Wed Sep 10 09:18:15 2014 -0400
@@ -0,0 +1,20 @@
+<tool id="extractseq" name="extractseq" version="0.03">
+<description>Extract Sequence around variant position</description>
+<command interpreter="perl">
+    extractseq.pl -input_variant_file $input_variant_file -input_assembly_file $input_assembly_file -window_length $window_length > $output_file 
+</command>
+<inputs>
+<param name="input_variant_file"  type="data" format="pileup" label="Select a suitable input VARIANT file from your history"/>
+<param name="input_assembly_file"  type="data" format="fasta" label="Select a suitable input ASSEMBLY file from your history"/>
+<param name="window_length" type="integer" value="50" label="Number of bases extracted before and after the variant position"/>
+</inputs>
+<outputs>
+ <data name="output_file" format="fasta" label="${tool.name} on ${on_string}"/>
+</outputs>
+
+<help>
+
+
+
+</help>
+</tool>