--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rapsodyn/fastaGroomerForMakeBlastdb.xml	Wed Sep 10 09:18:15 2014 -0400
@@ -0,0 +1,20 @@
+<tool id="fastaGroomerForMakeBlastdb" name="fastaGroomerForMakeBlastdb" version="0.01">
+<description>fasta Groomer For MakeBlastdb</description>
+<command interpreter="perl">
+    fastaGroomerForMakeBlastdb.pl $input_fasta > $output_fasta
+</command>
+<inputs>
+	<param name="input_fasta"  type="data" format="fasta" label="Select a suitable input FASTA file from your history"/>
+</inputs>
+<outputs>
+	<data name="output_fasta" format="fasta" label="${tool.name} on ${on_string}"/>
+</outputs>
+
+<help>
+MakeBlastDb has several warning handled has error which is problematic on galaxyn This groomer ensure that the fasta file will not generate this warnings / error :
+
+- First line of the sequence is more than 40% of N => replace all the 'N' of the first line by 'a' (not elegant but low impact and efficient) 
+
+- Header line should not have [xxx=xxx] kind of text because MakeBlastdb try to interpret it => remove the [] when this feature is detected 
+</help>
+</tool>