Mercurial > repos > mcharles > rapsosnp
diff rapsodyn/MergeFile4x.xml @ 1:7f36bd129321 draft
Uploaded
author | mcharles |
---|---|
date | Wed, 10 Sep 2014 10:24:01 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rapsodyn/MergeFile4x.xml Wed Sep 10 10:24:01 2014 -0400 @@ -0,0 +1,36 @@ +<tool id="MergeFile4x" name="MergeFile4x" version="0.01"> +<description>Merge splitted file</description> +<command interpreter="perl"> + MergeFile4x.pl $input_file1 $input_file2 $input_file3 $input_file4 > $output_file +</command> +<inputs> +<param name="out_format" type="select" label="Format"> + <option value="pileup">pileup</option> + <option value="fastq">fastq</option> + <option value="fastqsanger">fastqsanger</option> + <option value="sam">sam</option> + <option value="fasta">fasta</option> +</param> +<param name="input_file1" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 1st file from your history"/> +<param name="input_file2" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 2nd file from your history"/> +<param name="input_file3" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 3rd file from your history"/> +<param name="input_file4" type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 4th file from your history"/> +</inputs> +<outputs> +<data name="output_file" format="txt" label="MERGE on ${on_string}"> + <change_format> + <when input="out_format" value="pileup" format="pileup" /> + <when input="out_format" value="fastq" format="fastq" /> + <when input="out_format" value="fastqsanger" format="fastqsanger" /> + <when input="out_format" value="sam" format="sam" /> + <when input="out_format" value="fasta" format="fasta" /> + </change_format> +</data> +</outputs> + +<help> + + + +</help> +</tool>