Mercurial > repos > mcharles > rapsosnp
diff rapsodyn/Galaxy-Workflow-rapsosnp_v1.20_-_10x_-_sam.ga @ 8:d857538d9fea draft
Uploaded
author | mcharles |
---|---|
date | Fri, 10 Oct 2014 07:05:36 -0400 |
parents | 3f7b0788a1c4 |
children |
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--- a/rapsodyn/Galaxy-Workflow-rapsosnp_v1.20_-_10x_-_sam.ga Tue Oct 07 10:34:34 2014 -0400 +++ b/rapsodyn/Galaxy-Workflow-rapsosnp_v1.20_-_10x_-_sam.ga Fri Oct 10 07:05:36 2014 -0400 @@ -2,7 +2,7 @@ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", - "name": "rapsosnp v1.20 - 1x - sam", + "name": "rapsosnp v1.20 - 10x - sam", "steps": { "0": { "annotation": "", @@ -285,14 +285,14 @@ } ], "position": { - "left": 936.93310546875, + "left": 936.933349609375, "top": 338.43333435058594 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -326,14 +326,14 @@ } ], "position": { - "left": 943.93310546875, + "left": 943.933349609375, "top": 585.4333343505859 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -367,14 +367,14 @@ } ], "position": { - "left": 947.93310546875, + "left": 947.933349609375, "top": 812.433349609375 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -408,14 +408,14 @@ } ], "position": { - "left": 1267.93310546875, + "left": 1267.933349609375, "top": 343.43333435058594 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -449,14 +449,14 @@ } ], "position": { - "left": 1261.93310546875, + "left": 1261.933349609375, "top": 587.4333343505859 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -490,14 +490,14 @@ } ], "position": { - "left": 954.93310546875, + "left": 954.933349609375, "top": 1044.433349609375 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -531,14 +531,14 @@ } ], "position": { - "left": 1265.93310546875, + "left": 1265.933349609375, "top": 815.433349609375 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -572,14 +572,14 @@ } ], "position": { - "left": 953.93310546875, + "left": 953.933349609375, "top": 1282.433349609375 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -613,14 +613,14 @@ } ], "position": { - "left": 1265.93310546875, + "left": 1265.933349609375, "top": 1043.433349609375 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -654,14 +654,14 @@ } ], "position": { - "left": 1270.93310546875, + "left": 1270.933349609375, "top": 1281.433349609375 }, "post_job_actions": {}, "tool_errors": null, "tool_id": "PrepareFastqLight", - "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"illumina\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", - "tool_version": "1.01", + "tool_state": "{\"__page__\": 0, \"quality_type\": \"\\\"auto\\\"\", \"min_length\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"min_quality\": \"\\\"30\\\"\", \"input_read1_file\": \"null\", \"input_read2_file\": \"null\"}", + "tool_version": "1.03", "type": "tool", "user_outputs": [] }, @@ -1400,15 +1400,27 @@ "input_connections": { "input_files": [ { - "id": 37, + "id": 28, + "output_name": "output_sam_file" + }, + { + "id": 29, "output_name": "output_sam_file" }, { - "id": 36, + "id": 30, "output_name": "output_sam_file" }, { - "id": 35, + "id": 31, + "output_name": "output_sam_file" + }, + { + "id": 32, + "output_name": "output_sam_file" + }, + { + "id": 33, "output_name": "output_sam_file" }, { @@ -1416,27 +1428,15 @@ "output_name": "output_sam_file" }, { - "id": 33, - "output_name": "output_sam_file" - }, - { - "id": 32, + "id": 35, "output_name": "output_sam_file" }, { - "id": 31, + "id": 36, "output_name": "output_sam_file" }, { - "id": 30, - "output_name": "output_sam_file" - }, - { - "id": 29, - "output_name": "output_sam_file" - }, - { - "id": 28, + "id": 37, "output_name": "output_sam_file" } ] @@ -2702,15 +2702,27 @@ "input_connections": { "input_files": [ { - "id": 64, + "id": 69, + "output_name": "output_variant_file" + }, + { + "id": 73, "output_name": "output_variant_file" }, { - "id": 65, + "id": 72, "output_name": "output_variant_file" }, { - "id": 66, + "id": 71, + "output_name": "output_variant_file" + }, + { + "id": 70, + "output_name": "output_variant_file" + }, + { + "id": 68, "output_name": "output_variant_file" }, { @@ -2718,27 +2730,15 @@ "output_name": "output_variant_file" }, { - "id": 68, - "output_name": "output_variant_file" - }, - { - "id": 70, + "id": 66, "output_name": "output_variant_file" }, { - "id": 71, + "id": 65, "output_name": "output_variant_file" }, { - "id": 72, - "output_name": "output_variant_file" - }, - { - "id": 73, - "output_name": "output_variant_file" - }, - { - "id": 69, + "id": 64, "output_name": "output_variant_file" } ] @@ -2802,63 +2802,71 @@ "input_connections": { "input_files": [ { - "id": 7, + "id": 75, "output_name": "log_file" }, { - "id": 8, + "id": 69, "output_name": "log_file" }, { - "id": 9, + "id": 73, "output_name": "log_file" }, { - "id": 12, + "id": 72, + "output_name": "log_file" + }, + { + "id": 71, "output_name": "log_file" }, { - "id": 14, + "id": 70, "output_name": "log_file" }, { - "id": 10, + "id": 68, "output_name": "log_file" }, { - "id": 11, + "id": 67, "output_name": "log_file" }, { - "id": 13, + "id": 66, "output_name": "log_file" }, { - "id": 15, + "id": 65, "output_name": "log_file" }, { - "id": 16, + "id": 64, + "output_name": "log_file" + }, + { + "id": 42, "output_name": "log_file" }, { - "id": 28, + "id": 41, "output_name": "log_file" }, { - "id": 29, + "id": 37, "output_name": "log_file" }, { - "id": 30, + "id": 36, "output_name": "log_file" }, { - "id": 33, + "id": 34, "output_name": "log_file" }, { - "id": 35, + "id": 32, "output_name": "log_file" }, { @@ -2866,71 +2874,63 @@ "output_name": "log_file" }, { - "id": 32, + "id": 35, "output_name": "log_file" }, { - "id": 34, + "id": 33, "output_name": "log_file" }, { - "id": 36, + "id": 30, "output_name": "log_file" }, { - "id": 37, - "output_name": "log_file" - }, - { - "id": 41, + "id": 29, "output_name": "log_file" }, { - "id": 42, + "id": 28, "output_name": "log_file" }, { - "id": 64, + "id": 16, "output_name": "log_file" }, { - "id": 65, + "id": 15, "output_name": "log_file" }, { - "id": 66, + "id": 13, "output_name": "log_file" }, { - "id": 67, + "id": 11, "output_name": "log_file" }, { - "id": 68, - "output_name": "log_file" - }, - { - "id": 70, + "id": 10, "output_name": "log_file" }, { - "id": 71, + "id": 14, "output_name": "log_file" }, { - "id": 72, + "id": 12, "output_name": "log_file" }, { - "id": 73, + "id": 9, "output_name": "log_file" }, { - "id": 69, + "id": 8, "output_name": "log_file" }, { - "id": 75, + "id": 7, "output_name": "log_file" } ]