Mercurial > repos > mcharles > rapsosnp
view rapsodyn/SplitFileUpTo10x.xml @ 11:0c2743f66e4f draft
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author | mcharles |
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date | Mon, 19 Jan 2015 04:42:08 -0500 |
parents | 0e7c6fe60646 |
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<tool id="SplitFileUpTo10x" name="SplitFileUpTo10x" version="1.00"> <description>Split file in 2-10</description> <command interpreter="perl"> SplitFileUpTo10x.pl $input_file $line_number $file_number $output_file1 $output_file2 $output_file3 $output_file4 $output_file5 $output_file6 $output_file7 $output_file8 $output_file9 $output_file10 </command> <inputs> <param name="out_format" type="select" label="Format"> <option value="pileup">pileup</option> <option value="fastq">fastq</option> <option value="fastqsanger">fastqsanger</option> <option value="sam">sam</option> <option value="fasta">fasta</option> <option value="tabular">tabular</option> </param> <param name="input_file" type="data" format="txt,tabular,astq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable input file from your history"/> <param name="line_number" type="integer" value="4" label="Number of line read at a time before splitting"/> <param name="file_number" type="integer" value="4" label="Number of split files"/> </inputs> <outputs> <data name="output_file1" format="txt" label="PART1 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file2" format="txt" label="PART2 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file3" format="txt" label="PART3 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file4" format="txt" label="PART4 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file5" format="txt" label="PART5 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file6" format="txt" label="PART6 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file7" format="txt" label="PART7 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file8" format="txt" label="PART8 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file9" format="txt" label="PART9 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> <data name="output_file10" format="txt" label="PART10 on ${on_string}"> <change_format> <when input="out_format" value="pileup" format="pileup" /> <when input="out_format" value="fastq" format="fastq" /> <when input="out_format" value="sam" format="sam" /> <when input="out_format" value="fasta" format="fasta" /> <when input="out_format" value="tabular" format="tabular" /> <when input="out_format" value="fastqsanger" format="fastqsanger" /> </change_format> </data> </outputs> <help> </help> </tool>