Mercurial > repos > mcharles > rapsosnp
view rapsodyn/ParseBlastForUniqueMatch.xml @ 2:761fecc07fa9 draft
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author | mcharles |
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date | Thu, 11 Sep 2014 03:10:47 -0400 |
parents | 442a7c88b886 |
children | 3f7b0788a1c4 |
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<tool id="ParseBlastForUniqueMatch" name="ParseBlastForUniqueMatch" version="0.01"> <description>Filter mpileup with blast results</description> <command interpreter="perl"> ParseBlastForUniqueMatch.pl $input_variant_file $input_blast_file $window_length $nb_mismatch_max > $output_file </command> <inputs> <param name="input_variant_file" type="data" format="pileup" label="Select a suitable input VARIANT file from your history"/> <param name="input_blast_file" type="data" format="tabular" label="Select a suitable input BLAST file (25 or 5 custom column(qseqid,qstart,qend,ssseq,sseq) from your history"/> <param name="window_length" type="integer" value="50" label="Number of bases extracted before and after the variant position"/> <param name="nb_mismatch_max" type="integer" value="3" label="Threshold for mismatch filter"/> </inputs> <outputs> <data name="output_file" format="pileup" label="${tool.name} on ${on_string}"/> </outputs> <help> </help> </tool>