<tool id="PrepareFastqLight" name="PrepareFastqLight" version="0.01">
<description>Fastq preparation</description>
<command interpreter="perl">
    PrepareFastqLight.pl $input_read1_file $input_read2_file $output_read1_file $output_read2_file $quality_type $min_quality $min_length
</command>
<inputs>
<param name="input_read1_file"  type="data" format="txt,fastq" label="Select a suitable FASTQ READ 1 file from your history"/>
<param name="input_read2_file"  type="data" format="txt,fastq" label="Select a suitable FASTQ READ 2 file from your history"/>
<param name="quality_type" type="select" label="Select input quality format">
   <option value="sanger">Sanger</option>
   <option value="illumina">Illumina 1.3-1.7</option>
 </param>
<param name="min_quality" type="integer" value="30" label="Minimum quality for 5' and 3' trimming "/>
<param name="min_length" type="integer" value="30" label="Minimum sequence length after trimming"/>
</inputs>
<outputs>
<data name="output_read1_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
<data name="output_read2_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
</outputs>

<help>



</help>
</tool>