Mercurial > repos > md-anderson-bioinformatics > heat_map_creation
diff mda_heatmap_gen.xml @ 35:6ad3c487987d draft
Uploaded ng-chm version 2.5.3 handles java 8 issue and updates to heatmap viewer
author | insilico-bob |
---|---|
date | Mon, 05 Nov 2018 11:17:23 -0500 |
parents | 58437af2d675 |
children | 11a5827d5559 |
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--- a/mda_heatmap_gen.xml Thu Feb 08 14:45:46 2018 -0500 +++ b/mda_heatmap_gen.xml Mon Nov 05 11:17:23 2018 -0500 @@ -1,14 +1,15 @@ <?xml version="1.0" encoding="UTF-8" ?> -<tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.3"> +<tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.5"> <requirements> <requirement type="package" version="3.4.1">r-base</requirement> + <requirement type="package" version="1.8">java</requirement> </requirements> <description>Create Clustered Heat Maps</description> <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap.sh "standard" "Heat_Map_$hmname" "$hmdesc" '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__/' 0 0 labels labels 'None' #for $op in $operations - ${op.class_name} - ${op.repeatinput.file_name} - ${op.cat} + '${op.class_name}' + '${op.repeatinput.file_name}' + '${op.cat}' #end for '$output' </command>