# HG changeset patch
# User insilico-bob
# Date 1541539812 18000
# Node ID d747292c486ff6a6e7478cbfaad04c9ba61c04ad
# Parent  9359e0a0d40b98fae82ec33f47737a7523ded243
Uploaded

diff -r 9359e0a0d40b -r d747292c486f mda_advanced_heatmap_gen.xml
--- a/mda_advanced_heatmap_gen.xml	Mon Nov 05 11:23:57 2018 -0500
+++ b/mda_advanced_heatmap_gen.xml	Tue Nov 06 16:30:12 2018 -0500
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" ?>
-<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.5.3">
+<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3">
   <requirements>
-    <requirement type="package" version="3.4.1">r-base</requirement> 
-	 <requirement type="package" version="1.8">java</requirement>
+       <requirement type="package" version="3.4.1">r-base</requirement> 
+	   <requirement type="package" version="8.0.144">openjdk</requirement>
   </requirements>
   <description> Create Clustered Heat Maps with Advanced Options</description>
-  <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh  'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' 
+<command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh  'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' 
 
     "
     #for $attr in $hm_attribute