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1 <?xml version='1.1' encoding='utf-8'?>
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2 <tool id="Matrix_Multiply" name="Matrix Compose" version="1.2.4">
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3 <description> one matrix using one or two matrices</description>
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4 <command interpreter="python">Matrix_Multiply.py '$extra.input1' 'extra.$transpose' 'extra.$input2' '$extra.choice' '$output_file'</command>
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5
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6 <inputs>
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7 <conditional name="extra">
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8 <param name="choice" type="select" label="Choose composition type">
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9 <option value="MatrixMultiply">Matrix Multiplication</option>
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10 <option value="Corr2Matrices">Correlate two matrices</option>
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11 <option value="Corr1Matrix">Correlate one matrix with itself</option>
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12 </param>
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13
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14 <when value="MatrixMultiply">
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15 <param name="input1" type="data" format="tabular" label="First Input Matrix size NxM" />
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16 <param name="transpose" type="select" label="transpose matrix?">
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17 <option value="y">Transpose matrix</option>
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18 <option value="n" selected="true">Do Not transpose matrix</option>
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19 </param>
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20 <param name="input2" type="data" format="tabular" label="Second Input Matrix size NxP" />
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21 </when>
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22 <when value="Corr2Matrices">
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23 <param name="input1" type="data" format="tabular" label="First Input Matrix size NxM" />
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24 <param name="transpose" type="select" label="transpose matrix?">
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25 <option value="y">Transpose matrix</option>
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26 <option value="n" selected="true">Do Not transpose matrix</option>
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27 </param>
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28 <param name="input2" type="data" format="tabular" label="Second Input Matrix size NxP" />
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29 </when>
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30 <when value="Corr1Matrix">
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31 <param name="input1" type="data" format="tabular" label="Input Matrix" />
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32 <param name="transpose" type="text" size="10" hidden="true" value="n" />
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33 <param name="input2" type="data" hidden="true" value="$input1" />
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34 </when>
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35 </conditional>
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36
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37
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38 <!-- <param name="thresh" type="float" size="4" value=".05" label="Filter Threshold (Axes with Metric below Threshold will be Removed)" />
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39 <param name="transpose" type="select" multiple="false" display="checkboxes" label="transpose first matrix?">
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40
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41 <param name="axes" type="select" label="Chose Axes to Filter on (Rows or Columns)">
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42 <option value="Row">Row</option>
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43 <option value="Column">Column</option>
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44 </param>
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45 -->
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46 </inputs>
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47
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48 <outputs>
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49 <data name="output_file" format="tabular" />
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50 </outputs>
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51
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52 </tool> |
