Mercurial > repos > md-anderson-bioinformatics > matrix_manipulation
comparison Matrix_Multiply.xml @ 1:f1bcd79cd923 draft default tip
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| author | insilico-bob |
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| date | Tue, 27 Nov 2018 14:20:40 -0500 |
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| 0:7f12c81e2083 | 1:f1bcd79cd923 |
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| 1 <?xml version='1.1' encoding='utf-8'?> | |
| 2 <tool id="Matrix_Multiply" name="Matrix Compose" version="1.2.4"> | |
| 3 <description> one matrix using one or two matrices</description> | |
| 4 <command interpreter="python">Matrix_Multiply.py '$extra.input1' 'extra.$transpose' 'extra.$input2' '$extra.choice' '$output_file'</command> | |
| 5 | |
| 6 <inputs> | |
| 7 <conditional name="extra"> | |
| 8 <param name="choice" type="select" label="Choose composition type"> | |
| 9 <option value="MatrixMultiply">Matrix Multiplication</option> | |
| 10 <option value="Corr2Matrices">Correlate two matrices</option> | |
| 11 <option value="Corr1Matrix">Correlate one matrix with itself</option> | |
| 12 </param> | |
| 13 | |
| 14 <when value="MatrixMultiply"> | |
| 15 <param name="input1" type="data" format="tabular" label="First Input Matrix size NxM" /> | |
| 16 <param name="transpose" type="select" label="transpose matrix?"> | |
| 17 <option value="y">Transpose matrix</option> | |
| 18 <option value="n" selected="true">Do Not transpose matrix</option> | |
| 19 </param> | |
| 20 <param name="input2" type="data" format="tabular" label="Second Input Matrix size NxP" /> | |
| 21 </when> | |
| 22 <when value="Corr2Matrices"> | |
| 23 <param name="input1" type="data" format="tabular" label="First Input Matrix size NxM" /> | |
| 24 <param name="transpose" type="select" label="transpose matrix?"> | |
| 25 <option value="y">Transpose matrix</option> | |
| 26 <option value="n" selected="true">Do Not transpose matrix</option> | |
| 27 </param> | |
| 28 <param name="input2" type="data" format="tabular" label="Second Input Matrix size NxP" /> | |
| 29 </when> | |
| 30 <when value="Corr1Matrix"> | |
| 31 <param name="input1" type="data" format="tabular" label="Input Matrix" /> | |
| 32 <param name="transpose" type="text" size="10" hidden="true" value="n" /> | |
| 33 <param name="input2" type="data" hidden="true" value="$input1" /> | |
| 34 </when> | |
| 35 </conditional> | |
| 36 | |
| 37 | |
| 38 <!-- <param name="thresh" type="float" size="4" value=".05" label="Filter Threshold (Axes with Metric below Threshold will be Removed)" /> | |
| 39 <param name="transpose" type="select" multiple="false" display="checkboxes" label="transpose first matrix?"> | |
| 40 | |
| 41 <param name="axes" type="select" label="Chose Axes to Filter on (Rows or Columns)"> | |
| 42 <option value="Row">Row</option> | |
| 43 <option value="Column">Column</option> | |
| 44 </param> | |
| 45 --> | |
| 46 </inputs> | |
| 47 | |
| 48 <outputs> | |
| 49 <data name="output_file" format="tabular" /> | |
| 50 </outputs> | |
| 51 | |
| 52 </tool> |