Mercurial > repos > md-anderson-bioinformatics > matrix_manipulation
diff Test_input_into_file.xml @ 1:f1bcd79cd923 draft default tip
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author | insilico-bob |
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date | Tue, 27 Nov 2018 14:20:40 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Test_input_into_file.xml Tue Nov 27 14:20:40 2018 -0500 @@ -0,0 +1,61 @@ +<?xml version='1.1' encoding='utf-8'?> +<tool id="Test-input-into-file" name="Test-File" version="1.0.0" force_history_refresh="True"> + <description> Read xml params into a file</description> + +<command interpreter="python">Test-input-into-file.py $inputfile "$__tool_dir__" $outputfile + #for $op in $test_param1 + ${op.discrete_fields1.Text_Fields1} + #end for + "$EndofVarParam1" + "$Covariate_Type" + "$EndofVarParam2" + #for $op in $test_param3 + ${op.discrete_fields3.Text_Fields3} + #end for + "$EndofVarParam3" + </command> +<!-- #in=$__tool_dir__/$inputfile + #inputfile="$__tool_dir__"$inputfile + +type Describes the parameter type - each different type as different semantics + and the tool form widget is different. Currently valid parameter types are: + text, integer, float, boolean, genomebuild, select, color, data_column, hidden, hidden_data, baseurl, file, ftpfile, data, data_collection, library_data, drill_down. The definition of supported parameter + types as defined in the parameter_types dictionary in /lib/galaxy/tools/parameters/basic.py. + --> + <stdio> + <exit_code range="1:" level="fatal" /> + </stdio> + <inputs> + <data format="txt" name="inputfile"/> + <repeat name="test_param1" title="Select 1 or more Covariate Clinical Categories"> + <conditional name="discrete_fields1"> + <param name="Text_Fields1" type="select" label="Covariate Bar Choices" help=""> + <option value='cat_EMPTY' selected="true">Click cursor in middle of this text to see choices</option> + <option value='cat_SampleTypeCode'>Sample Cohort</option> + <option value='cat_gender'>Gender</option> + <option value='cat_race'>Race</option> + </param> + </conditional> + </repeat> + <param name="EndofVarParam1" type="hidden" value="paramend1" </param> + <param name="Covariate_Type" type="select" value="" label="Type of Covariate Bars" help="Choose Sample or Gene covariate bar files"> + <option value="S" selected="true">Participant-Sample</option> + <option value="G" >Gene</option> + </param> + <param name="EndofVarParam2" type="hidden" value="paramend2" </param> + <repeat name="test_param3" title="Select 1 or more Covariate Clinical Categories"> + <conditional name="discrete_fields3"> + <param name="Text_Fields3" type="select" label="Covariate Bar Choices" help=""> + <option value='cat_EMPTY' selected="true">Click cursor in middle of this text to see choices</option> + <option value='cat_SampleTypeCode'>Sample Cohort</option> + <option value='cat_gender'>Gender</option> + <option value='cat_race'>Race</option> + </param> + </conditional> + </repeat> + <param name="EndofVarParam3" type="hidden" value="paramend1" </param> + </inputs> + <outputs> + <data format="txt" name="outputfile" label="${tool.name} on ${on_string}"/> + </outputs> +</tool>